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- [x] report scaffold containing best hit per feature in genetic map
- [ ] extract features from reference annotations as pseudo genetic map
- [x] autodetect when to use gmap vs. gmapl
- [ ] tune t…
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Hello,
My current project aims at weighting GWAS snp effects for trait1 with GWAS snp effects from trait2. The LDSC rg genetic correlations is about 0.1. In my scenario, do you think it's ok for usi…
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I want to compute LDSC heritability and genetic correlation of a genome-wide meta-analysis including repeated observations and I was wondering what value for sample size I should use.
For example,…
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Dears,
I am working with the Rye algorithm for genetic ancestry analysis and need guidance on a few points:
Configuring Reference and Query Samples: How do I designate samples as reference or qu…
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Hey guys,
just documenting @infatrus idea from #general/Discord. https://github.com/mkmarek/forex.analytics looks very promising:
> The result of technical analysis are two binary trees describi…
crubb updated
7 years ago
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Active in 2021: [Active]
**Researchers**: Elizabeth Goldmuntz and Deanne Taylor (CHOP), A.J. Agopian (UTH), Ryan Urbanowicz (UPenn)
**Platforms**: NHLBI BioData Catalyst + Kids First DRC @jackDiGi
…
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Hi,
Thank you for creating this software.
In the paper (https://www.nature.com/articles/s41467-021-22334-6), it was noted that LOGODetect was utilized for a single-population-cross trait analysis i…
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Hi,
I am trying to use ldsc to compute genetic correlation and am doing so using Compute Canada. For both of my phenotypes, I ran the analysis on smaller-sized test sets (since the original dataset…
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https://arxiv.org/pdf/1705.00594
While artificial intelligence (AI) has become widespread, many commercial AI systems are not yet accessible to individual researchers nor the general public due to …
leo-p updated
7 years ago
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Interop Contact: Alisa Manning
Active in 2021: [Finished, Active, Inactive]
Researchers: Alisa Manning, Brian O’Connor, Timothy Majarian
Platforms: NHGRI AnVIL + Kids First DRC
Analysis Questi…