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I'm currently working with the Jenetics library to implement a genetic algorithm and I've run into a specific need that I'm not sure how to address. I need to apply different mutation strategies to di…
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Add new met and updated obs files
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We want to implement bitcoding with the following schema
```
00 00000000 0
AA 00000001 1
AC 00000010 2
AG 00000011 3
AT 00000100 4
Ai 00000101 5
CC 00000110 6
CG 00000111 7
CT 00001000 8
C…
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accounting for strand flips
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Hey all,
I would like to use G2P software for my population genetics analysis. I converted the dbSNP VCF file into a ped and map file but when I start a single population simulation I get no result…
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Some points to consider in get_genotype_vcf.py
- [Extracting the chr values from the bim](https://github.com/populationgenomics/saige-tenk10k/blob/4f00b431e873f98f7c3890ebdb191fb80d975568/get_genot…
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Hi Devon,
Thanks for this really helpful tool!
I noticed that the "assess_missing_data" functions will throw an error if the VCF file has phased genotypes (i.e., the delimiter is a "|" instead o…
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There was a discussion in Slack that a general API that could handle management of materialized views related to the genotype_call table would be useful.
In the discussion I suggested that an API t…
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(I couldn't see an issue for this)
We need to export the new interactions that are attached to phenotype annotations.
The documentation needs updating too: https://github.com/pombase/canto/wiki/…