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Hi,
Thanks for the great tool and for PySEER! I'd like to visualize the cDBG underlying the unitig counts but do not know how to work with the output files created (graph.h5, graph.edges.dbg, and gra…
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### Name and Institution (Required)
Name: Lixu Jin
Institution: University of Montana
### Description of your issue or question
In the process of integrating GFAS fire emissions into models usin…
jinlx updated
4 months ago
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_From @fedarko on April 16, 2017 9:29_
I guess the input to the script would be:
1. the list of node IDs, created by the viewer application
2. some source of DNA for nodes in the assembly graph in …
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**PLEASE DO NOT MAKE SUPPORT REQUESTS HERE**
Please the Biostars forum instead:
https://www.biostars.org/new/post/?tag_val=vg
Ok I will post on Biostars later.
Hello dear friends!
Tha…
yeeus updated
3 weeks ago
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[Gdoc Documentation](https://docs.google.com/document/d/1mpYa11NRGEdMZAtNBeUHXv_WFiHD_IRqZRXHVIaOFUY/edit#heading=h.4f6omwdxebl9)
We will need a visualization capability to be able to visualize and b…
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@ekg Do you think it will be useful?
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Tools on which we are working currently:
* https://github.com/nanoporetech/scrappie
* nanoplot: https://github.com/bgruening/galaxytools/pull/771
Tools that are already integrated:
* nanopolis…
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I'm wondering if we can convert the current bcalm output by spacegraphcats to gfa. These are the current output files in `*_k31`:
```
bcalm.inputlist.txt bcalm.unitigs.db cdbg.gxt con…
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Hi!
I have constructed the multiple graphs and i want to combine that to a single graph file. But I found that both `vg combine` and `vg ids` can combine multiple vg files, and the output size is d…
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Another discussion thread. It is probably too early to implement libraries now, but it would be good to start thinking about the topic.
Currently, gfatools comes with [very preliminary APIs](https:…