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I'm attempting to produce Giotto results for the Spatial LIBD data using the [SEDR Analyses](https://github.com/JinmiaoChenLab/SEDR_analyses)
The issue seems to be that the _par_ files are not gett…
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It would be nice to be able to return a data.table on the fly _without_ the key.
This would be useful for things like regressions where you might want to keep a key, but you don't want to include i…
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Hi,
I'm running Spotclean on the provided test data of adult mouse brain following the vignette. However, the function spotclean() produces a Warning and then stops running:
data(mbrain_raw)
…
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## NPC translation functions to support named positions
With 'ggplot2' 3.5.0, support is built-in, but with a different syntax, making the `_npc` geoms from 'ggpp' rather redundant. The changes in …
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Support for Org-Mode files could be added.
Several codes in other languages are written in this format, e.g., Shell, Python, and R.
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##Week 1 ICNSA using all the data
``` r
library(reprex)
library(fredr)
library(ggplot2)
library(forecast)
#> Registered S3 method overwritten by 'quantmod':
#> method from
#> …
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Hello everyone, I have encountered a problem when analyzing spatial transcriptome data with the protocol in (https://satijalab.org/seurat/articles/spatial_vignette.html). When I use `SpatialPlot()` fu…
ghost updated
1 month ago
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## What goes wrong
I deployed my application on shinyapps.io.
It works properly locally, but it doesn't work online, it seems like I have a bug with gar_set_client()
## Steps to reproduce the p…
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I've found three small issues in this lesson:
**Issue 1 - creation of data folder**
In the lesson "Starting with data" the download.file() function is used to download the CSV file that contain …
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Using ggplot2 3.5.0, I have found that the line ends of error bars do not stay centered when using position_jjitterdodge, although it works properly with position_dodge. This also leads to unexpected …