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for large NEURON simulations it is important to be able to have precise memory use information. This can help us mainly in two ways:
1. Tracking memory as a simulation runs can help us debug out of m…
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Hi,
In https://it4innovations.github.io/hyperqueue/stable/deployment/allocation/, the documentation says :
> You can create multiple allocation queues, and you can even **combine PBS queues with…
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I want to use the adaptive scaling for running jobs on HPC clusters, but it keeps crashing after a while. Using the exact same code by static scaling works perfectly. I have reduced my project to a …
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Meeting summary from 2024-08-28 (participants: ST, MP, JTdB, RB)
# Which repository to use
- We start from https://coderefinery.github.io/hpc-containers/ (this repo)
- We won't teach all the …
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An user should leverage parallelism on HPC clusters to run starfish and process volumetric data like seqFISH data (s3://spacetx.starfish.data.public/seqfish/).
I am wondering if it is possible roughl…
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- Standardized template so configuration files fit with scripts.
- Current command from integration server: sbatch [script/path] [number_of_jobs] [number_of_parallel_jobs]
- Need to handle which file…
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Some HPC clusters now promote using [uftp](http://uftp-multicast.sourceforge.net/) to transfer files. Would be nice to support this protocol.
See https://www.hpcwire.com/off-the-wire/gcs-centres-sc…
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**1) We followed the discussion with hernandezvargash to tweak the installation in our cluster, and now the test data runs smoothly and mimics the ouput provided here.**
**2) With real data (~10000…
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Launch funcx-endpoint following instructions here:
https://github.com/funcx-faas/funcX/tree/forwarder_rearch_1/funcx_sdk/funcx/tests
Part of the test campaign: #318
Linux is the standard across…
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Maintaining configurations for various HPC clusters in BOUT-configs has proved to be useful. Should we recommend and link to it from the ["machine specific installation"](https://bout-dev.readthedocs.…