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Add support for requesting genomic data in encrypted (crypt4gh) format.
Htsget (more specifically [htsget-rs](https://github.com/umccr/htsget-rs)) is supposed to support this functionality, as desc…
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Hi,
I wondered for a while why ChaCha20-Poly1305 was selected by GA4GH for data encryption and the closest I could find were notes on fixed blocksize giving possibility to jump into middle of a str…
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Two ideas to improve Crypt4GH v1
(1) The original Crypt4GH standard validates the content of a file using by using MACs (message authentication codes) for each block of the file. This ensures that …
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Hi,
I got an error with samtools 1.18-7-gae19296 using htslib 1.18-17-g5acbc15, both on mac and centos7
I used the exact commands on Centos
On MAC I got a samtools config error (ld: unknown optio…
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Following on from my colleague's [issue](https://github.com/igvteam/igv.js/issues/1691) a while back, I have been investigating why newer versions of IGV.js are no longer compatible with our Htsget se…
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**Failing to download dataset due to tqdm**
**Description of the bug**
Installed pyega3 (from pip) and tried to download a dataset:
```sh
pyega3 -c 30 -cf CREDENTIALS_FILE fetch EGAD00001…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)?
Yes, I am using v1.8
…
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I've run clean from both dev and stable branchs, same result no matter what.
I took the extra steps of loading in the ingestion test data (which completes successfully surprisingly), but end up wit…
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For the summer in some repos the needed approvals have been changed to one review because in some periods only two GS developers were working.
Change it back to two after summer when most of the devel…
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## Goal
Add a new command `modos stream` to modos cli
## Context
Streaming from python is hard due to pysam's limited capabilities to work on byte streams. In the meantime we can still implement…