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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (option…
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This is a suggestion to support the graph6, sparse6 and digraph6 file formats. These are used by the [nauty suite](http://pallini.di.uniroma1.it). Nauty comes with many command line tools that read a…
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Hello,
Importing scanpy unsuccessful. Please see below for details. This is after the Igraph package is successfully imported.
```
`------------------------------------------------------------…
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Hi all,
I am currently doing research related to range-limited betweenness centrality, which consists in computing the betweenness of each node taking only paths up to a given max length. As this f…
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The DOT format writer is surprisingly slow, causing timeouts in the `write_all_gml` and `write_all_graphml` fuzz targets. Originally, I believed that the performance issues were due to Flex (which is …
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On the [available python wheel ](https://docs.computecanada.ca/wiki/Available_Python_wheels) page, it would be really nice to include python packages included in module.
Some examples are:
- pyarro…
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Hey Shobi!
I get the following when trying to `pip install parc` in a fresh Anaconda environment with Python 3.7 on both Mac OS X 10.14.6 (Mojave) and on AWS' flavor of Linux:
```
Collecting pa…
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**Describe the bug**
The following code used to work, but is now throwing an error, assuming the datatype of the resulting df changed from SparkDataFrame to pyspark.sql.connect.dataframe.DataFrame
…
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I've begun working on a Python implementation of pkgnet. 🎉
Branch is here: https://github.com/jayqi/pkgnet/tree/py-pkg/py-pkg
This issue will track progress and discussion on design decisions. …
jayqi updated
4 months ago
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Closeness vitality is a measure proposed in [Brandes and Erlebach (2005), Section 3.6.2](https://books.google.fr/books?id=VIMSPCIafakC&pg=PA38#v=onepage&q&f=false) (see screenshot below). It has been …