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It would be nice to have some documentation or tutorial that explains how to install and configure the server (install mongodb, configure kaiju to use that mongodb instance and configure it). For now …
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I am trying to taxonomically classify my reads using only the viral database. This is the code I used:
kaiju -t /home/akhwela/kaijudb/viruses/nodes.dmp -f home/akhwela/kaijudb/viruses/kaiju_db_vir…
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I have a metagenome from a mixed culture bioreactor enriched in Archaea whose reads I classified using both Kraken2 and Kaiju. I then merged the classifications using the kaiju-mergeOutputs script wit…
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Hi all,
We are trying to get this pipeline working with the included control dataset so we can use it to characterize a variety of novel bacteriophages that we think may be circularly permuted with…
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Hi,
I was trying to create the database for Fungi and RefSeq but the program seems not to unzip the files and use it in "kaiju-gbk2faa.pl", so it generates empty .faa files and therefore it's not ab…
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**Describe the bug**
When analyzing object-oriented programs, it would be helpful to be able to draw on the strength of Ghidra as well as Pharos + Kaiju. Unfortunately, the same does not work fully s…
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We should rewrite the rules to use their own conda environments, as the dependencies here may conflict with other extensions.
https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#i…
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Hello,
thank you for creating this amazing tool!
I'm trying to custom a uniref90 DB from the uniref90.fsa file. I have made the file has a format like
>1_1572043
MEEITQIKKRLSQTVRLEGKEDLLSKKDSITN…
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Noticed this in v0.0.8, the final column of the ``kodoja_VRL.tsv`` output file is a taxid representing the combination of the Kraken and Kaiju assignment, but is shown as a float not an integer. i.e. …
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**Describe the bug**
* The non-classic function hasher is called "Kaiju Function Hashing" instead of "CERT Function Hashing"
* I don't see a "CERT Function Hash Viewer" or "CERT Function Intersectio…