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Hello,
Im running the ldsc.py and getting this correlation matrix wrong in all the chromosome except in the first one.
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Summary of LD Scores in results/annots/mac.dc.2.l2.ldscore.gz
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Hi~
Can I get the file "hapmap3_snps.tgz" from the website(https://alkesgroup.broadinstitute.org/LDSCORE/) ?
I couldn't find it on this website. Do you know if there is another website to obtain it …
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Hello,
I am on MacOS 10.12.6, conda 4.5.11, following the instrucitons for installation found in the README file I encountered and error related to numpy (see details below).
I modified the file e…
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Thank you for uploading the codes and the corresponding data. The work shown in the paper is really impressive. I have two questions about the cellular process program:
1) Could you upload the cellul…
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It work well when single trait is analyzed separately. However it fails when two traits are analyzed together using --rg.
Could you help me figure out it?
Thank you very much!
The details are as …
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Hello there!
I was trying to do some LCV analysis, but I did not understand how I read de LD scores files. That is because the ones I use in LDSC are many files (they come in a directory) and in th…
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I am trying to do the cell type analyses following the example with the Cahoy cell types and consistently get the error that Cahoy.1.l2.ldscore[./gz/bz2] cannot be opened. All files are executable, I …
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Hi, I have trouble with "irwls", I can't find the package named "irwls", and the original erorr message is below:
"...../ldsc/ldscore/regressions.py", line 15, in from irwls import IRWLS
ModuleN…
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Hello
It work well when single trait is analyzed separately. However it fails when two traits are analyzed together using --rg.
Could you help me figure out it?
Thank you very much!
The detail…
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Hi all,
Could you please provide a link to retrieve the reference files eur_w_ld_chr.tar.bz2 and w_hm3.snplist.bz2? The link https://data.broadinstitute.org/alkesgroup/LDSCORE/ is currently not wor…