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By correlation plots (#229) I just mean a scatter plot comparing two variables. Below I've given a use case example from one of our labs projects [vallenderlab](https://github.com/vallenderlab) [also…
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[metacode.zip](https://github.com/grunwaldlab/metacoder/files/6304164/metacode.zip)
I'm getting only NA's in my taxon ranks after running parse_tax_data. I tried a couple of things for the regex, b…
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Minor question. There are multiple occurrences of `clazz` in the `README.md`. Should this be "class", or are you trying to avoid using the reserved word "class"?
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Dear Zachary and members of the Grunwald lab,
first of all: Thank you very, very much for the metacoder heat tree package! These heat trees open up so many possibilities!
I have a question regardi…
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Hi Grunwaldlab,
Thanks for the amazing package. It's _beautiful_.
Quick question (has come up before here, but no appropriate solutions found as far as I can tell):
I'm running an analysis on a p…
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Hello,
Thank you for developing MetaCoder. I am enjoying the package so far. I am trying to filter my dataset before plotting heat trees, but instead of throwing counts away for low-abundant taxa, …
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fyi. the phyloseq package also has a filter_taxa() command, so when I tried run the vignette, i got an error. After searching help on filter_taxa, i realised that i just needed to use metabarcoder::…
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Hello,
I think I discovered something when using `filter_taxon` together with `taxon_ranks`.
If a taxon does not have information on the rank you filter for, also with `supertaxa = TRUE`, the taxo…
LChWu updated
4 years ago
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Hello @zachary-foster
I attended your workshop at the Phytobiome Conference in Montpellier last December and I managed to realize several comparing heat trees (using a phyloseq object). Again, tha…
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:wave: here! in https://github.com/ropensci/taxa#use-cases you mention binomen but binomen README states that most of its functionality has migrated to here.
I was also wondering if you have more a…