-
@kitchell
I am looking into the 3Dsurfaces datatype (https://brainlife.io/datatypes/59307a08436ee50ffd973278) and see if we can use this to output pRF surface. Although most 3Dsurfaces dataobjects…
-
### Script/Job File
```
#!/bin/bash
#$ -pe smp 16
#$ -q UI
#$ -m bea
#$ -M adriana-rivera-dompenciel@uiowa.edu
#$ -o /Shared/vosslabhpc/Projects/CREST/code/fmriprep/out/
#$ -e /Shared/voss…
-
I would like to run GLMdenoise on surface data (specifically freesurfer .mgz files). Is that possible or does GLMdenoise make some assumptions that require the data to be volumes or something about th…
-
At each import of a new volume, I get this error:
```
Loading /mnt/f/RawData/Epileptogenicity/TELe/Implantation1/Gre_2016_TELe/t1mri/T1pre_2015-12-18/Gre_2016_TELe.nii
QPixmap::setMask() mask size …
-
I chose the RAS coordinates for each contact after aligning the post-op CT with the pre-op T1 in freeview. According to the steps in protocols.io, when load T1 volume, the “Resample to standard RAS sp…
-
Hi,
ciftify gives me the following error:
/Users/neurolab/opt/anaconda3/lib/python3.7/site-packages/ciftify/utils.py:286: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, a…
-
Hi,
I'm trying to set fsaverage_to_vol() to convert mgz files from HCP project, from fsaverage to MNI, the data samples are under this project (https://osf.io/bw9ec/), precisely inside the archive (…
-
Dear Author,
I am very interested in your project. While using the commit from the PR and loading the latest version of the recordings, I found that the tile_format seems to be outdated. I modified…
-
Running fmriprep (v1.4.0) gives me random i/o-related autorecon3 errors in around half the subjects, similar to [this](https://neurostars.org/t/could-not-read-error-while-file-out-freesurfer-sub-001-m…
fliem updated
4 years ago
-
The workshop uses a container that runs some analysis with Fastsurfer. This [requires a GPU](https://github.com/HealthBioscienceIDEAS/MedICSS-Project-Repro-Pipelines/blob/6aa7368c6467f29eb5a72ff5a949e…