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Dear developer, I was trying to download the pep.all.fa files for the species “Conger conger” and “Gymnothorax javanicus” from the ensembl database. But I found that there are no relevant files for th…
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see MusSPRETEiJ_1411 scaffold10053:33,443-33,453
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Hi,
I am running Xtail on some Ribosome Profiling data but I am struggling to understand the direction in which the genes are differentially translated.
I ran the package as follows:
```
mRN…
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How can we elucidate the ground truth for the mol_mrna from the dyngen object?
I am following the tutorial [here](
https://dyngen.dynverse.org/articles/getting_started.html#step-5-simulate-gold-st…
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I think we need to create two specific children of this term - there are two different methyltransferase activities involved here, one acting on the first nucleoside and one acting on the second nucle…
sjm41 updated
7 months ago
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I used the [data_mrna_agilent_microarray.txt](https://github.com/cBioPortal/datahub/blob/master/public/brca_metabric/data_mrna_agilent_microarray.txt) data from the portal
[brca_metabric](https://git…
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This function in SGN::View::Feature is relied upon by lots of code. It needs tests to make sure it works correctly in all edge cases (of which it has many).
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@pascaleproulx
I have a working GoLLM task for AMR enrichment. We need to integrate it with the rest of the task runner architecture @kbirk. Example outputs below.
BIOMD0000000024
```
{…
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For the Spot detection there is a mix up of the inputs for voxel_size and object_radius.
The code should have psf values in nanometers define the voxel_size_nm and the object_radius_nm is the appro…
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Dear Tobias:
I have part of the data 4SU labeled mRNA library built using the total RNAseq. How do I use slamDunk to analyze them. Same issue #89
By the way, what is the mismatch of the slamdunk…