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I have installed using conda, however, I get the following error.
Tried changing "ftp" to "https" in the rsync_from_ncbi.pl file, but did not help.
~/software/VIRUSBreakend$ kraken2-build --do…
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I have noticed that some assemblies, in the NCBI database, does not have a corresponding fna/fasta file alongside their assembly_report file. Like this one for example: [GCF_000001405.10](https://ftp.…
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Thanks so much for your continued work on this really helpful workflow, @AstrobioMike !
I have a feature request (so low priority) regarding GToTree. Currently, if a list of NCBI assembly accession…
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Hi Kraken2 developers/community,
I recently built a large Kraken2 database with genomes from the NCBI RefSeq database. I added genomes regardless of assembly level and limited it to 1 assembly per …
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Can someone tell me which assumption convert_gff3_to_ncbi_tbl makes on the formatting of the names? Apparently ours miss something:
```
python3 gff/convert_gff3_to_ncbi_tbl.py -i ../juncus.fasta.…
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Hi,
I would like to blast the assembly against the databases of NCBI, but not via the Web blast by rather via a local search. In the blast SEARCH wizard in the GUI the build blast database setup on…
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**Is your feature request related to a problem? Please describe.**
Currently the entry for Variant Validator in Variant Info page is empty. We need to fix it in order to provide a possibility to acce…
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Hi,
I want to use criprVerse on a custom genome - a cell line- (no reference in public database like UCSC or NCBI)
I tried to adapt the tutorial "Design_Custom_Sequence" https://github.com/crisprVe…
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I am very interested in the development of strainberry, especially as it applies to metagenomics with PacBio HiFi data. I wanted to draw your attention to a new PacBio dataset I recently uploaded to N…
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There are actually two public transcritomes.
1. De novo transcriptome assembly and analysis of differential gene expression in response to drought in European beech
Raw sequence reads were submitt…