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Point density - number of points per voxel
04.11.20022 Harry made this one (Python scripts).
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it turns out that we get failures to generate reports with several atlases.
- fetch_atlas_destrieux_2009
- fetch_atlas_aal
- fetch_atlas_basc_multiscale_2015
- fetch_atlas_yeo_2011
```
Fi…
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Hi I was trying the collage module on the example jupyter notebook through the docker image. However on trying to pass a numpy array of a nifti image, collage.execute() results in an error. I am addi…
umgpy updated
3 years ago
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### Describe the Bug
The code used in this path packages/nifti-volume-loader/examples/niftiBasic/index.ts
### error
![image](https://github.com/user-attachments/assets/3ffecdea-653d-4514-9e9e…
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I haven't done anything near a complete inventory of where metadata is loaded in QSIPrep, but in at least one location ([`get_metadata_for_nifti`](https://github.com/PennLINC/qsiprep/blob/527ef590f1c2…
tsalo updated
2 months ago
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Hi - My goal is to view a local nifti file (.nii) on the neuroglancer demo appspot. So, I made a directory and placed the file in it, then ran [cors_webserver.py](https://github.com/google/neuroglance…
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How can I import DICOM images for segmentation or other labeling task ? Converting to png may not be a good choice as the transforming threshold needs to be adjusted at any time.
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## Description
The recent change of code for detecting unique values uses image shape for sampling random integers. This will throw an error when dealing with single channel 4D volumes since it would…
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Thank you for sharing your work.
I was curious to understand the id's in index.py file under "data" folder, what kind of id's are they? and in the code is 2d slices is utilized rather then 3D nifti a…
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We have a couple of functions to read nifti file
- niftiRead (wrapper function)
- readFileNifti (c-based mex?)
- niftiReadMatlab (based on Jimmy Shen's tool)
I don't know the historical bac…