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Hello everyone, I'm trying to export a nii segmentation file in a RTSTRUCT-DICOM file.
The ROIs in DICOM appear rotated.
The dataset I have from https://nbia.cancerimagingarchive.net (CT/ Whole …
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If you transform a set of nifti images using the masker (result a), and compare that to the result of first transforming the first half of the images, then the second half, and concatenate the resul…
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it turns out that we get failures to generate reports with several atlases.
- fetch_atlas_destrieux_2009
- fetch_atlas_aal
- fetch_atlas_basc_multiscale_2015
- fetch_atlas_yeo_2011
```
Fi…
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Hi Marco,
I was wondering if it is possible to save all of the maps (CBV, CBF etc.) without loosing the nifti header information of the input file (dsc.nii). This step allows to visualize the maps …
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I am in the process of adding libminc to MacPorts.
I have nifticlib 2.0.0 installed and I would like libminc to use it.
I have used `-DLIBMINC_USE_SYSTEM_NIFTI=ON` when running `cmake`, but the …
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## Task Description
The test data in `algorithm-dev` is wrong here
https://github.com/trendscenter/coinstac/tree/master/algorithm-development/test-data/nifti-test-data
replace it with
https://g…
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In order to write these files, we need methods for:
- [ ] writing a `NiftiHeader` to a file (".hdr") or writer;
- [ ] writing a volume to a file (".img") or writer, with or without gzip;
- [ ] wr…
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Point density - number of points per voxel
04.11.20022 Harry made this one (Python scripts).
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This problem came up from [this issue](https://github.com/bamf-health/aimi-kidney-ct/issues/8#issuecomment-2417869101) when I tried to run the bamf_nnunet_ct_kidney model on a ct scan from[ TCGA-KIRC]…
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I wanted to ask if it's possible to run inference using DCM sequences directly with nnU-Net, without the need to convert them to NIfTI format.
Thank you for your help!