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There is a fundamental issue in our approach of trying to convert MR data into the Nifti images objects.
MR data have many different dimensions, obviously 3 spatial ones, but the additional ones (a…
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### What feature or change would you like to see made?
Hello!
Currently cornerstoneNiftiVolumeLoader cannot load nifti files with datatypeCode = 2 (uint8): it throws the following error:
`8 Bit s…
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Hello, I tried your method and succesfully got the images. I now confused about how many classfications do the dataset have? Are there four classfications?
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I tried to save reconstructed MR images as dicom/nifti images but I ran into a couple of issues.
Here is the script which I ran on v3.2:
```
import sirf.Gadgetron as pMR
import sirf.Reg as pR…
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HT and BW think we should add a capability of saving a NIfTI that represents the RMSE of the tensor fit at each voxel. The histogram of this error could represent the SNR of the diffusion data.
We c…
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#372 forces the use of the identity aggregator in the case of output that is not the same shape as the input image e.g. single value regression. The identity aggregator saves output as nifti images. T…
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Hi,
I am trying to convert tiff images into the required nifti format using the following function:
https://github.com/MIC-DKFZ/nnUNet/blob/06505439d5e3239105c867c6b380a95f44090431/nnunet/utilit…
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Hi all, I tried to create a Data_IO without segmentations.nii.gz and only the imaging data, but it fails when the file is not present.
I trained the model already, it's perfect I want to use it for…
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Currently Magia can read the raw PET files in dcm, ecat or nifti format, and the MR images in dcm format. However, ecat is no longer used at least in Turku, so it would make sense to no longer support…
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The B1 map dicom images were not converted to nifti during dcm2bids conversion. Since they do in fact exist, they should be re-listed in the documentation. Apologies for the mixup!