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Hello. Thank you for your amazing work.
I got a problem when I try to fine tune a pretrained model on my personal dataset(Dataset020). Following the steps in documentation/pretraining_and_finetuning.…
yy042 updated
1 month ago
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Originily posted in https://github.com/ivadomed/data-conversion/pull/13#issuecomment-1602932801 by @tzebre:
> About the naga comment for softseg support :
>
> > But, if we can find a way to enc…
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Hi, thanks to your great work.I'm having some issues running your code. Can you give me some help？@YzzLiu
in function get_tp_fp_fn_tn（）
‘’‘
def get_tp_fp_fn_tn(net_output, gt, disMap = None, axes…
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Hello,
Thank you very much for the repository and the provided pretrained models. I have seen that you added some scripts for nnUNet v2 to run fine-tuning as well as the STUNetTrainer.
I have a da…
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I tried running the contrast phase detection pipeline:
```bash
bin/C2C contrast_phase -i /data/dicom_dir/
```
This crashes with the following error:
```bash
Inference pipeline:
(1) DicomT…
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Traceback (most recent call last):
File "/usr/local/bin/nnUNet_train", line 33, in
sys.exit(load_entry_point('nnunet', 'console_scripts', 'nnUNet_train')())
File "/content/UNetPlusPlus/pyt…
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Hi, first of all thank you for this wonderful software. I was trying to use it on the VerSe database, specifically on this version [here](https://osf.io/nqjyw/). I have tried to run moosez in:
- my d…
puccj updated
3 months ago
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Hello there..
How do I set the number of desired epochs when training with mednext as follows:
`!mednextv1_train 3d_fullres nnUNetTrainerV2_MedNeXt_M_kernel3 2023 3 -p nnUNetPlansv2.1_trgSp_1x1x…
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Unable to identify why this error is occurring. I tried so many times.
However, I followed all the steps that were needed. Directories and structure of the dataset are according to the nnUNET require…
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When I train model, I met FileNotFoundError: [Errno 2] No such file or directory root/my_nnunet/nnUNet/nnunet/preprocessed/Task001/nnUNetPlansv2.1_plans_2D.pkl
![image](https://github.com/FrancoisP…