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References that are associated with taxon constraints, and which are visible in go-plus.obo, are not finding their way into go-plus.json
A couple of examples from go-plus.obo:
[Term]
id: GO:004…
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### Describe the bug
ValueError: identifier already in use: is_a (Relationship('is_a', name='is a'))
### To Reproduce
1. Use https://github.com/althonos/pronto to create an Ontology using the…
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Consistent with other RDF serializations we should add a prefixes header
```yaml
prefixes:
slot_uri: sh:declare
range: PrefixDeclaration
multivalued: true
inlined: true
…
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I know this case is clearly not a use case for obographs-json, but the behaviour is super chaotic:
Example of an HPO class in the international edition
```
Abnormáln…
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Currently the Dumper.dump() method accepts a `syntax` argument, this is sometimes called `format` in other frameworks, e.g. robot.
The problem here is that this is frequently ambiguous, especially …
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ENVO imports BFO, as a result some terms such as the one below end up being non-compliant to the OBO spec:
- more than one definition
- duplication of information (see disjoint_from: BFO:0000020 b…
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Many potential applications of OWL are web based. An _idiomatic_ javascript API supporting a subset of use cases could greatly simplify adoption.
@cmungall developed a wrapper for use with the JV…
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# Overview
Followed from:
- #367
We have a preliminary dumper: https://github.com/INCATools/ontology-access-kit/releases/tag/v0.1.57
# Bugs
## Bug list
- [ ] 1. CLI doesn't work; Only the P…
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## Overview
@twhetzel recently decided on #404. WIth that comes a new development workflow.
## Sub-tasks
- [ ] 1. Formulate the SOP @twhetzel @matentzn
- [ ] 2. Finalize and upload somewhere @j…
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We are going to start doing some work in our group comparing transcriptome samples across a number of species. It looks like the upheno ontology is exactly what we are looking for! The 6 species we ar…