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We plan to use [UCSB's HPC clusters](https://csc.cnsi.ucsb.edu/clusters) to run the analysis on the new species (and maybe all species if the workflow changes a lot). There are several options, some o…
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`decoupleR::get_collectri()` relies on the https://omnipathdb.org which is down.
```r
BiocManager::install(c("decoupleR", "OmnipathR"))
library(decoupleR)
tftg
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- need openmpi
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Hello
I tried to pip install the package in spyder. But it failed, below is lines from console. tried .whl or the .gz, both failed.
pip install scTriangulate
Collecting scTriangulate
Using c…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [x] (option…
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I am attempting to run a simple get_progeny command as shown:
```r
net
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Hi,
I would like to use this tool for my project which is human data. I tried to find gene programs but I am not sure whether all the files are in the repo. For example
`
"../data/gene_programs/…
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Thank you for taking the time to submit an issue!
## Background information
Found issue when using a 2 HFI system but 1 was disabled causing command to open way too many contexts for 1 HFI
### …
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**Describe the bug**
A clear and concise description of what the bug is.
Hi, When I used "dc.get_resource('MSigDB', organism='mouse')" or "dc.translate_net(target_organism = 'mouse')", I got this …
wgsim updated
1 month ago
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Hi,
It seems like the website [omnipathdb.org](https://omnipathdb.org) is down. I'm following the [tutorials](https://liana-py.readthedocs.io/en/latest/notebooks/prior_knowledge.html) from LIANA a…