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This is a task associated with the charter epic #7
### Which mapping tool or framework do you want to introduce to our Working Group?
Simple Standard for Sharing Ontological Mappings (SSSOM)
* …
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We have a curation table for finngen that goes back to FinnGen R6. This was a high-quality curation process that started from a template that I generated in this project https://github.com/opentargets…
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Dear all,
The proposal has been made to obsolete GO:0006490 oligosaccharide-lipid intermediate biosynthetic process , and its regulation children,
see https://github.com/geneontology/go-ontology…
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Please provide as much information as you can:
* **GO term ID and Label**
[GO:0044845](https://www.ebi.ac.uk/QuickGO/term/GO:0044845) chain elongation of O-linked mannose residue
* **Reaso…
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OAK contains a "secret" application, the Ontology Mapping Kit
Code:
https://github.com/INCATools/ontology-access-kit/tree/main/src/oaklib/omk
Currently there is one core method, for performin…
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Dear all,
The proposal has been made to obsolete to GO:0019551 glutamate catabolic process to 2-oxoglutarate
See:
https://github.com/geneontology/go-ontology/issues/15331
(read from the botto…
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BioPortal REST API call to retrieve all mappings between two ontologies:
http://data.bioontology.org/mappings?ontologies=GO-PLUS%2CRH-MESH
... returns a large number of empty pages. Page count …
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COB changes preferred labels of several ontologies, which is kinda "injection".
Examples:
id: GO:0005634
name: cell nucleus (instead of nucleus)
id: GO:0003674
name: gene product or complex a…
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These are included in go-plus.owl, but not go-plus.json.
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[stack.txt](https://github.com/ncbo/ncbo_annotator/files/1952429/stack.txt)
When expand_mappings=true and we do not restrict the ontologies to use for the annotation, using include=X (any attribute…