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I've been working on several data sets lately looking at community change before/after a treatment, and have been working on [some code](https://gist.github.com/gregcaporaso/79dc526708b1e739ea8d) for …
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It's the second person that contacts me because of the non-continuous trait error message:
https://github.com/funecology/fundiversity/blob/0a58ab61c400fc732a2e1fda17686abe278b01e7/R/fd_fric.R#L65-L…
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Hello,
I am trying to do a K-Means Clustering Analysis on my data and when I tried to do the analysis, I received an error: (Error:K-Means error) and I was disconnected from the server.
I have c…
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QIIME currently only implements Principal Coordinate Analysis (PCoA) for dimensionality reduction and subsequent viewing with Emperor. While PCoA is a tried and true method within the metagenomic com…
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Hi Joey,
I have a microbial dataset with taxa (species) and samples and I'm plotting these in a PCoA based on Bray-Curtis. Based on the PERMANOVA, I selected 20 taxa out of >5600 that are most import…
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Is there a command to add ellipse around cluster in your NMDS or PCoA plots?
x1=plot_ordination(sponge.scale1,unifrac.nmds,color="Day")+geom_point(size=3)
I tried following:
https://www.biostars.or…
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I am using the function plot_heatmap to do a heatmap of my microbiome samples. I would like to color the bacterial taxa (on the y axis) according to the clusters they belong to (1, 2, 3 or 4).
I do…
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Hi Joey,
Do you have any plans to incorporate Cameron Martino's [DEICODE](https://forum.qiime2.org/t/robust-aitchison-pca-beta-diversity-with-deicode/8333) method into the ordinate function of phyl…
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I see so many papers using the Galaxy/LefSe taxonomy trees, it would be great to help[ Empress](https://github.com/biocore/empress) be even more accessible by adding it to Qiita. Any chance we could …
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**Addition Description**
Is it possible for us to allow for `Visualization`s to be "combined"?
**Current Behavior**
`Visualization`s are single units of terminal output.
**Proposed Behavior**
…