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Hello!
I'm building a software called OpenGenomeBrowser, which has a MSA feature ([example](https://opengenomebrowser.bioinformatics.unibe.ch/compare-genes/?genes=FAM18356-i1-1.1_000244+FAM18356-i1…
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https://github.com/revbayes/revbayes
This is an intepreted language similar to R. It is useful for building trees. One powerful use case is that it would allow us to add meaningful branch lengths t…
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I have come across many publications wherein they use simulated data sets using model of substitutions and parameters like number of indels, number of OTUs, trees, branch length, partitions etc. to as…
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Dear @ekmolloy
I'm posting here because from your research article I think that perhaps could not be possible but I prefer to ask here to be sure. Thanks on advance.
I'm trying to construct an …
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From @rvosa:
> Imagine if we encoded the entire treebase nexml dump to JSON-LD, what could we do? If we also ingested the NCBI taxonomy, we could map between it and the tips of treebase trees (to t…
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Hi, liang:
After done the simulation of gene trees using Phybase, i want do a correlation analyses between simulated genetrees and empirical gene trees , like this:
![图片](https://user-images.githubu…
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Lightning talk: "ape: Analyses of Phylogenetics and Evolution"
**Authors:** Emmanuel Paradis, Simon Blomberg, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Gilles Didier, Benoit Duran…
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Dear team,
Thanks for the powerful package!
My infercnv version is 1.10.1 and I'm trying to generate phylogenetic trees with subclustering info using Uphyloplot2. So I use the random_trees m…
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Tree building jobs starts, but stops almost immediately, in a few seconds. No meaningful output files are generated. But a detailed error message is generated. One example is below (all genomes in …
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Hi,
I am trying to merge two phyloseq objects containing samples from different environments. I have used QIIME2 and Deblur to clean the data and obtain the phylogenetic tree, etc.
I can success…