-
-
draw on board every day; don't give students the handput with the phylogeny
-
the standard should include some way to allow for multiple entries for a single agent (id) at different times. One way would be to have a 'sample_time' field which indicates the time when the data on …
-
Lizzie decided the priors are too informative in the phylogeny model and @MoralesCastilla and I agreed to update them.
@MoralesCastilla Here's some updated results:
```
…
-
We should do a lit review of phylogeny papers that might be relevant to our manuscript!
I set up a file here:
docs/phylogeny/phenophylolit.csv
Can people add to it? And then we can assign people…
-
# Better reporting of removed genomes
If an automatic phylogenetic tree is produced via GToTree, it's possible that some low-quality genome sequences will be filtered out by GToTree during tree const…
-
I am trying to run parsnp for 330 bacteria genome (genome size ~2mb). The alignment seems to work properly. but it failed in the last step, the error message is pasted below.
Your help would be great…
-
hello, rengang! This is an excellent tool that provides a very convenient command line to implement what used to be such a complex process.
However, during my use, I found that the functionality it p…
-
Currently, reasoning results are maintained even if the phylogenies change. Whenever the phylogeny changes, the reasoning results should be deleted so that re-reasoning is required
-
Do it in R.
One tree for all e.g. MarDB genomes, another for the ones we found in our data.