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nextstrain
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nextclade_data
Datasets for https://github.com/nextstrain/nextclade
https://clades.nextstrain.org
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Advance staging to master
#226
corneliusroemer
closed
1 week ago
3
[don't merge] just to get a test server up
#225
corneliusroemer
closed
1 week ago
0
Update mpox all-clades dataset to include clade Ib sequences
#224
corneliusroemer
closed
1 week ago
0
Add dengue lineages dataset
#223
jamessiqueirap
closed
1 week ago
26
fix: RBD position numbering
#222
rneher
closed
1 month ago
0
non-CDS line in gff3 file read as CDS line, required to be divisible by 3
#221
lakras
opened
1 month ago
8
Add yellow fever virus dataset
#220
genehack
opened
1 month ago
8
Add mpox clade I dataset
#219
corneliusroemer
closed
1 month ago
0
rsv: update datasets
#218
rneher
closed
1 month ago
0
Add influenza A H5N1 dataset
#217
anna-parker
opened
1 month ago
10
Update SC2 datasets
#216
corneliusroemer
closed
1 month ago
0
docs: fix outdated link in dataset creation guide
#215
chaoran-chen
closed
1 month ago
1
Example link in dataset creation guide is outdated
#214
chaoran-chen
closed
1 month ago
0
flu_h1n1pdm_ha_broad: Add samples from early pandemic-era clades
#213
huddlej
closed
2 months ago
1
feat: mutations relative to arbitrary node (extended)
#212
ivan-aksamentov
closed
2 months ago
0
Rename `master` to `main`
#211
genehack
opened
2 months ago
0
Fix tree bug
#210
corneliusroemer
closed
2 months ago
0
Update SC2 datasets
#209
corneliusroemer
closed
2 months ago
0
Add Dengue virus All serotypes dataset
#208
j23414
closed
2 months ago
13
feat: improve warning message in ref check
#207
ivan-aksamentov
closed
3 months ago
0
feat: warn when standalone ref and tree ref don't match exactly
#206
ivan-aksamentov
closed
3 months ago
0
feat: index add dataset capabilities
#205
ivan-aksamentov
closed
3 months ago
0
fix: remove old hack
#204
ivan-aksamentov
closed
3 months ago
0
Add Dengue virus DENVx genotypes dataset
#203
j23414
opened
3 months ago
19
Add measles dataset
#202
kimandrews
closed
3 months ago
2
add .meta.extensions.nextclade.pathogen
#201
ivan-aksamentov
closed
3 months ago
0
Cornelius cchfv
#200
corneliusroemer
opened
3 months ago
0
Add CCHFV to nextclade_data.
#199
anna-parker
opened
3 months ago
3
add ref nodes to `nextstrain/sars-cov-2/wuhan-hu-1/proteins` dataset
#198
ivan-aksamentov
closed
2 months ago
1
West Nile Virus overview
#197
corneliusroemer
opened
4 months ago
0
moncla-lab: add initial IAV h5 datasets
#196
rneher
closed
4 months ago
0
feat: add default cds to hiv-1 dataset
#195
ivan-aksamentov
closed
4 months ago
0
HIV-1 followup
#194
ivan-aksamentov
closed
4 months ago
0
Increase excessBandwidth for SC2 datasets
#193
corneliusroemer
closed
4 months ago
0
Update mpox datasets to include new lineages B.1.21, B.1.22, and C.1.1
#192
corneliusroemer
closed
4 months ago
0
flu: post-season subclade update for seasonal influenza
#191
rneher
closed
4 months ago
1
docs: add tree to file list
#190
j23414
opened
4 months ago
1
SC2 April release
#189
corneliusroemer
closed
4 months ago
0
Next update for sars-cov-2 (and nextstrain/sars-cov-2/wuhan-hu-1/proteins) dataset?
#188
icestorm972
closed
4 months ago
1
Latest flu_h1n1_na module is missing NA subclade "B"
#187
uee9
closed
4 months ago
3
data: initial commit of community neherlab/HIV-1 dataset
#186
rneher
closed
4 months ago
0
fix: make sure files are zipped in the same order
#185
ivan-aksamentov
closed
6 months ago
0
Reference-only Ebola Zaire and Sudan
#184
corneliusroemer
opened
6 months ago
0
`./scripts/rebuild` fails when run with new dataset as "FileNotFoundError: [Errno 2] .../nextclade_data/data_temp/nextstrain__ebola__zaire__unreleased.zip'"
#183
corneliusroemer
closed
6 months ago
1
chore: ensure reproducible zip archives
#182
ivan-aksamentov
closed
6 months ago
1
New flu_h3n2_ha nextclade data module does not have EPI accessions
#181
nhassell
closed
4 months ago
3
fix: switch reference accession/name for PRRSV dataset
#180
corneliusroemer
closed
6 months ago
0
flu: update A/H3N2 HA datasets with new subclade alias
#179
rneher
closed
6 months ago
0
fix: dataset zips retroactively [skip ci]
#178
ivan-aksamentov
closed
6 months ago
0
fix: version tags in released zip archives
#177
ivan-aksamentov
closed
6 months ago
0
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