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nextstrain / nextclade_data

Datasets for https://github.com/nextstrain/nextclade
https://clades.nextstrain.org
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Next update for sars-cov-2 (and nextstrain/sars-cov-2/wuhan-hu-1/proteins) dataset? #188

Closed icestorm972 closed 5 months ago

icestorm972 commented 5 months ago

Hi,

as the last update is ~54 days old (2024-02-16) and since then pango-designation released v1.26 (with all these "FLirT" and other sublineages of JN.1 👀), updated datasets for sars-cov-2* in nextclade would be nice to have? 🙃

CC @corneliusroemer

Best wishes and thanks David

ivan-aksamentov commented 5 months ago

Hi @icestorm972,

Cornelius just released the new SC2 datasets, includding the nextstrain/sars-cov-2/wuhan-hu-1/orfs (with shortcut sars-cov-2) and nextstrain/sars-cov-2/wuhan-hu-1/proteins. They are already available on https://clades.nextstrain.org and in Nextclade CLI. Please check them out! Open a new issue if there's still remaining questions.