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Datasets for https://github.com/nextstrain/nextclade
https://clades.nextstrain.org
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Latest flu_h1n1_na module is missing NA subclade "B" #187

Closed uee9 closed 4 months ago

uee9 commented 5 months ago

Hi There,

The nextclade tree and training set for H1N1pdm09 NA set appears to be missing subclade B, which circulated from ~2018-2020. The current tree available on the online version goes from A.1.1 directly into B.1.

image

Overall, this is a relatively minor issue but I suspect the exclusion of B in the training set is a bug. Thanks.

rneher commented 5 months ago

thanks a lot for flagging this. we'll update the dataset soon!

rneher commented 4 months ago

should be fixed once https://github.com/nextstrain/nextclade_data/pull/191 is released.

uee9 commented 4 months ago

Thanks, Cc-ing Norman here so he’s aware.

Best, Matt

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From: Richard Neher @.> Sent: Tuesday, April 16, 2024 5:08:01 PM To: nextstrain/nextclade_data @.> Cc: Wersebe, Matthew (CDC/NCIRD/ID) (CTR) @.>; Author @.> Subject: Re: [nextstrain/nextclade_data] Latest flu_h1n1_na module is missing NA subclade "B" (Issue #187)

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should be fixed once #191https://github.com/nextstrain/nextclade_data/pull/191 is released.

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