-
* RNA-level predictions: free energy changes associated with nucleotide changes within a window (X bp before, X bp after) a nucleotide change; screen for RNAse targets within sequences (not sure if th…
-
This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
-
Re-visit the idea of annotating protein binding using the IDA evidence code and the annotation extension has_input wrt better aligning conventional and LEGO annotations.
Points to consider:
1. N…
-
homophilic cell adhesion via plasma membrane adhesion molecules
This sounds like a MF? (homophilic interactions = protein binding between identical proteins, as far as I understand it)
there are…
-
============
Dear all,
I am trying to run the current version tutorial FXR, and I g…
-
what is the PDB file format in oddt(RSC PDB, charmm PDB)?
I want to calculate interactions (salt bridge, hydrogen bonds, etc ) between a protein and a short peptide which obtained from MD simulation…
-
Hi there,
I've had no issues with the software - it's a great program! I was wondering if there is a code built in to export the genes associated with the senders, receivers, mediators, and influen…
-
Hi all!
For my project, I wish to describe the protein-ligand interactions between Mur Ligase and a known inhibitor, and hopefully, use this information to modify the molecule to extend its spectr…
-
Hi Nava,
I'm Roden Luo from the Gu Lab at University of Washington. We are developing a technology to detect protein-protein interactions via next generation DNA sequencing. I found your work, swif…
-
Based on the current experimental data as shown on the table, substituting the oxetane to cyclopropane leads to no binding at all. However, by substituting the chlorine with trifluoromethyl group …