jdwinkler resistome_generator issues

jdwinkler / resistome_generator

Development repo for the Resistome database and its tooling.

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issues

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Feature modules?

#20 jdwinkler opened 3 years ago
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Add penicillin binding protein => cell shape prediction

#19 jdwinkler opened 3 years ago
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Add seqfold for RNA/DNA stability predictions

#18 jdwinkler opened 3 years ago
2
Add reaction generator

#17 jdwinkler opened 3 years ago
0
Add protein stability information

#16 jdwinkler opened 3 years ago
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Add metabolic reaction information

#15 jdwinkler opened 3 years ago
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STRINGS database

#14 jdwinkler closed 3 years ago
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Add SNPs inferred from amino acid changes

#13 jdwinkler closed 3 years ago
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Add in STRINGs interaction data

#12 jdwinkler closed 3 years ago
1
Add SNPs inferred from AA changes

#11 jdwinkler closed 3 years ago
1
Ideas for further development

#10 jdwinkler opened 3 years ago
2
Added -10 and -35 promoter annotations

#9 jdwinkler closed 3 years ago
0
Add unit testing to key modules

#8 jdwinkler opened 3 years ago
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Add DeMaSk variant effect predictions, update license, doc improvements

#7 jdwinkler closed 3 years ago
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Run Demask to get better protein stability predictions

#6 jdwinkler closed 3 years ago
1
added helper scripts and Zenodo link for SNAP2 data. Identified a bun…

#5 jdwinkler closed 3 years ago
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Figure out how to distribute protein stability data.

#4 jdwinkler closed 3 years ago
1
Refactor SQL to use proper templating

#3 jdwinkler opened 3 years ago
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Dockerize repo

#2 jdwinkler opened 3 years ago
0
Optimize SQL calls in sql_interface

#1 jdwinkler opened 3 years ago
0