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Just an idea!
Quite often it is desired to use only the "experiments runner", e.g. have a smaller container just to run specific experiment. No GUIs (thus no wx) etc. For now I just built a full i…
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One big problem is fragmentation, everyone invents their own thing. This project should try and work against that trend by contributing to existing solutions/open source projects.
One reason for frag…
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Currently we only allow exporting datasets to external providers. It'd be really useful if a user could export a whole renku project, with datasets, code files etc., for instance for publication.
h…
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### Summary
https://the-turing-way.netlify.app/reproducible-research/renv/renv-containers.html and nearby sections are great but I think container-related aspects could be improved a number of as…
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As an **open science researcher**, I want to **provide Docker/Singularity container images** so that **others can reliably reproduce my results or reuse the same software**.
This implies th…
stain updated
5 years ago
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a document describing the spec, perhaps a json/json-ld schema
see [this](https://github.com/metadatacenter/cedar-docs/wiki/CEDAR-technical-documentation#json-schema-and-json-ld) as an example
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I have an issue minifying my neurodocker container. I generated it with
```
docker run --rm repronim/neurodocker:0.7.0 generate docker -b centos:7 -p yum --ants version=2.3.1 --fsl version=6.0.3 > …
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Hi,
I'm trying to install freesurfer 6.0.0 with neurodocker 0.7.0 to perform **longitudinal processing stream** and wonder what its **min version** contains so that I can reduce the docker image siz…
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Is this the correct "origin" for the pyramid image in the Motivation part: https://ucsbcarpentry.github.io/Reproducible-Publications-with-RStudio-Quarto/fig/01-fig5.png ? Or this: https://www.reprozip…
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Hi, when I run `conda-build` with `CONDA_BLD_PATH` set, the resulting `tar.bz2` package file contains many extra `_placehold_placehold_placehold_[...]` files.
### Actual Behavior
$ CONDA…