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Is there a quick way to pullout the translation efficiencies for all experiments at the end of the RiboR walkthrough? Right now am using cbind join the te_CDS and rc_CDS$transcripts, but am not sure t…
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Write blog post for both:
* EPCC [blog](https://www.epcc.ed.ac.uk/blog)
* The Software Sustainability Institute [blog](https://www.software.ac.uk/blog)
Link to previous blog post:
* EPCC, [R…
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Continuation of issue ticket #55
**Overarching goal:** Add datasets from [Lareau et al 2014](https://elifesciences.org/articles/01257) with the aim of replicating the results of the 17 inhibitory …
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Thinking towards the examples repository, could we put relevant metadata in the config.yaml to indicate provenance of the yaml file?
Preliminary suggestion:
```
provenance:
author: John Smit…
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Hi, do this riboflow pipeline suitable for paired end data set.
Cheers,
Ranj
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Meeting note on Feb 26. 2021
1. DNA footprinting pipeline(shared by Shannon): http://www.regulatory-genomics.org/hint/introduction/
2. DNA footprinting paper (shared by Shannon): https://genomebiolo…
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I am having trouble using the read pre-processing commands for reads with UMIs.
I have used the [McGlincy et al 2017](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5582988/) protocol to generate poole…
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This is a tracking issue for all missing or new JBrowse data. I've added what I think are the corresponding issue so I know which is which.
~- Gagneur/Eser #50~
~- variation data (then everythin…
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User survey
> integrate ribosome profiling data from Mata
>potential uORFs detected/confirmed by mass-spec in ncRNAs)
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I don't think I have permissions to create new branches. For now, I've placed all the things @FlicAnderson theoretically needs to recreate the issues I'm having https://rutgers.box.com/s/3d0se6r1g48tb…