XPRESSyourself XPRESSpipe issues

XPRESSyourself / XPRESSpipe

An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data

https://xpresspipe.readthedocs.io/en/latest/

GNU General Public License v3.0

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issues

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Dev

#57 j-berg closed 3 months ago
0
Dependencies not working

#56 j-berg closed 3 months ago
1
test

#55 j-berg closed 1 year ago
0
Cannot alignment

#54 hailong-hu closed 3 months ago
1
Compare gene coverage plots

#53 j-berg opened 1 year ago
0
rrnaProbe not producing any sequences

#52 cf-nb closed 1 year ago
3
Problem with Running Ribosome Profiling Pipeline

#51 chenghongdeng closed 2 years ago
3
Allow riboseq to handle paired end reads of both input and RPF libraries

#50 jdreyf closed 3 years ago
1
Read Pre-Processing with UMI Issue

#49 arish-n-shah closed 3 years ago
3
xpresspipe failure in urllib

#48 arish-n-shah closed 3 years ago
1
Failure to import xpressplot into python3

#47 arish-n-shah closed 3 years ago
5
test

#46 j-berg closed 3 years ago
0
Potential error in https://xpresspipe.readthedocs.io/en/latest/content/analysis.html

#45 jdreyf closed 3 years ago
11
Force dependencies

#44 j-berg closed 4 years ago
0
Some mods for ease of use

#43 j-berg closed 4 years ago
0
Make readDistributions self contained

#42 j-berg closed 4 years ago
0
Add `--genome_size_bp` option

#41 j-berg closed 4 years ago
0
RPM normalization without a GTF

#40 j-berg closed 4 years ago
0
curateReference gtfModify issue

#39 cjdecker closed 4 years ago
6
xpresspipe riboseq UMI bug?

#38 hollyjaro closed 4 years ago
2
Metagene OOM error

#37 j-berg closed 4 years ago
1
P-site QC not processing

#36 j-berg closed 4 years ago
2
xpresspipe won't pass the final installation check xpresspipe test

#35 hollyjaro closed 4 years ago
3
Updates to rRNA depletion and codon usage metrics

#34 j-berg closed 4 years ago
0
Moving alignment rrna depletion module to main branch for full data test

#33 j-berg closed 4 years ago
1
Mixed input file types

#32 j-berg closed 1 year ago
0
QC Summary Log

#31 j-berg closed 1 year ago
0
Create CODE_OF_CONDUCT.md

#30 j-berg closed 4 years ago
0
Modding memory threshold for bam files

#29 j-berg closed 4 years ago
0
Rebuilt read distribution module in Julia

#28 j-berg closed 4 years ago
0
Allow directories creation in output to overwrite output

#27 j-berg closed 1 year ago
0
Isoforms

#26 j-berg closed 4 years ago
0
Read Complexity Error

#25 j-berg closed 4 years ago
2
Metagene error

#24 j-berg closed 4 years ago
2
Read Distribution

#23 j-berg closed 4 years ago
2
Gene Coverage display error

#22 j-berg closed 4 years ago
1
Isoforms

#21 j-berg closed 4 years ago
0
Added integrated pipeline stability tests for Travis

#20 j-berg closed 5 years ago
0
Trimming seg fault

#19 j-berg closed 5 years ago
1
Periodicity not working with yeast

#18 j-berg opened 5 years ago
1
geneCoverage for genes with no introns

#17 j-berg closed 4 years ago
1
Codecov

#16 j-berg closed 5 years ago
0
Codecov

#15 j-berg closed 5 years ago
1
Testing codecov report method

#14 j-berg closed 5 years ago
1
Small output option

#13 j-berg closed 5 years ago
1
Update to outlier trimming for metagene

#12 j-berg closed 5 years ago
0
Fixed metagene spiking

#11 j-berg closed 5 years ago
0
Faster file type erroring with metagene

#10 j-berg closed 5 years ago
1
Finished updating docs

#9 j-berg closed 5 years ago
1
Docs

#8 j-berg closed 5 years ago
1