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Hi,
Thank you all the developers of `scIB` for the great package and also to suggest useful metrics to compare the performance of integration methods.
>WARNING: You may want to skip to the end…
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I am working on integrating multiple datasets together across a few species. Some are datasets that I've collected, and some are publicly available. Because of this, the sequencing saturation is going…
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I’m sitting playing with different ways of going about removing X-rays from the spectra in my spectrum images. If it’s a single spectrum I don’t mind using spikes_removal, but for a spectrum image, it…
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Hi there,
I am trying to run the Learn_graph function on my cds object and this error throws up. Can you help me understand where the problem is?
cds
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I was following the v5 integration vignette and I choose 50 dims to continue with the integration of my sketched object ( active slot sketch assay)
> DefaultAssay(filtered_obj_sketched)
[1] "sketc…
Flu09 updated
3 weeks ago
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I used below code to integrate data by rPCA, but error occurred, I've tried many ways but still couldn't solve this problem. appreciate it if you could help.
```
##### Perform integration #######
…
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See the discussion [here](https://github.com/biocore/songbird/issues/166#issuecomment-1518491954).
Option 1: adjust the "system requirements" section (maybe put this beforehand, and just have the s…
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Socrata's Spatial Lens (most prominently used in map view filters) determines the geographic regions (e.g., Chicago Community Area) in which a point record falls. These regions are not presented in an…
levyj updated
7 months ago
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Hi,
I used your Phylogenetic-RPCA-moving-pictures tutorial to get used to the phylogenetic-rpca. From my previous experiences using rpca via deicode - and now via gemelli - I was assuming that the d…
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I was able to use the fastMNN integration back in February, and now it's reporting errors when I run it. Same data, the R package used to be like 5.0? it seems to have been automatically upgraded to 5…