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Appears in dedup_sort_run_parallel.pbs but not in dedup_sort.sh.
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Hi! Great tool, very convenient and easy to use! Just want to bring to your attention a potential problem. If chromosome names supplied to whitelist are not in the same order as the bam file, the labe…
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This is long overdue. It's memory usage is excessive on long read technologies, plus the output simply isn't that useful either.
It was first written in an era of small (eg 75bp) fixed size alignm…
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Hi! Francisco
While running the `-t abundance ` I am running into a problem with the sam to bam conversation due to a duplicate header. When I checked the grep "NODE_1753_length_683_cov_1.602310" FDS…
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* link to support ticket: [#2024082260001125](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=165616)
* website: https://github.com/Nextomics/NextPolish
* installation docs: …
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I got the following error message when indrops tried to merge all bam files together. Any ideas what my problems are? Too may cells? Thank you.
[sample1] This worker assigned 3941 out of 3941 total…
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### Description of feature
The `qualimap` tool sorts the input bam file by read-name and does so in a single-threaded manner. On a dataset that I'm using, the total execution time of the tool is arou…
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Hi, I would like to advise you should insert -o option when you use samtools sort in your .pl script. In SAMtools version 1.3.1 it is required.
Moreover, when you create the sorted.bam file, file exte…
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Something seemed to have changed around Singularity v4 that prevents Singularity from pulling images that are too old:
```
$ singularity --version
singularity-ce version 4.0.3-jammy
$ singularity …
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Hello,
I was wondering if it's possible to add both bam and bed files as input for samtools coverage?
Thanks,
Amy