Sydney-Informatics-Hub Fastq-to-BAM issues

Sydney-Informatics-Hub / Fastq-to-BAM

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

GNU General Public License v3.0

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issues

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Minimum Information about Whole-genome Sequencing

#27 DarioS closed 6 days ago
2
not able to run the project

#26 Shrutiagarwal1805 closed 5 months ago
1
bqsr_recal.sh has Empty ref Variable

#25 DarioS closed 12 months ago
1
SAMTOOLS_NCPUS is Unused

#24 DarioS opened 12 months ago
1
bwa-postalt.js Fail to open the file

#23 nandan75 closed 1 year ago
0
Reference Bundle is Stored on Deprecated CloudStor Service

#22 DarioS opened 1 year ago
1
Reliance on Relative Paths

#21 DarioS opened 1 year ago
0
Where to download nci-parallel/1.0.0?

#20 tkcaccia closed 1 year ago
1
Fixed issue 18

#19 calizilla closed 2 years ago
0
BQSR Recalibration Make Input Only Processes Normal Sample Files

#18 DarioS closed 2 years ago
1
samblaster Path Hard-Coded to Inaccessible Path

#17 DarioS closed 2 years ago
1
nci-parallel call needs updating

#16 calizilla opened 2 years ago
0
Alternate Contig Alignments and Mapping Quality Zero

#15 DarioS opened 2 years ago
12
Question on categories for cohort.config file

#14 Ysuita closed 2 years ago
1
Dict Value Assignment Missing

#13 DarioS closed 2 years ago
1
align_make_input.sh lib_diff is Initialised Empty and Never Set Otherwise

#12 DarioS closed 2 years ago
1
No fastqc Module on Gadi

#11 DarioS closed 3 years ago
1
reformat_split_disc Removed From Pipeline

#10 DarioS closed 3 years ago
1
GATK ApplyBQSR Fails if Folder Coincidentally Named unmapped

#9 DarioS closed 3 years ago
1
Parallel Align Split FASTQs Has No Checking Script for Failures

#8 DarioS opened 3 years ago
0
Broken Path to Fixed NCI Parallel

#7 DarioS closed 3 years ago
1
Split FASTQ Make Input Loses Input Files

#6 DarioS closed 3 years ago
1
Update openmpi

#5 tracychew closed 3 years ago
0
Update README.md

#4 georgiesamaha closed 3 years ago
0
Create_v2_userguide

#3 georgiesamaha closed 3 years ago
0
Hard-Coded Dependencies on er01 Scratch

#2 DarioS closed 3 years ago
2
BWA Results Vary Based on Thread Number

#1 DarioS opened 3 years ago
2