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### Description of the bug
Viralrecon has worked perfectly for our SCV2 and some hybrid capture protocols (with the metagenomic side). However, when I ran the pipeline by passing a custom bed file an…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/729. (Thanks @FedeGueli for completing the proposal.)
![1](https://github.com/sars-cov-2-variants/lineage-proposals/as…
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I have discovered that in this project it uses the table of variants that I keep up to date.
Yesterday I made a change to reflect the way the WHO calls variants that were VOC or VOI but are no long…
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This is the sibling lineage of LF.3.1.1 previously described as Branch 2 in https://github.com/sars-cov-2-variants/lineage-proposals/issues/1558.
It is still a small lineage but having been sampled i…
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When running Artic on a sample with too few reads, resulting in too small coverage, Longshot automatically calculates the maximum coverage as 0, and fails. We're having issues with that in an automati…
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I've heard a few folks ask about aerosols in the last couple months. I think our choice so far has basically been to disregard it as a feature or offer people workarounds as 1-1 advice.
Ran across…
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Hi, I have read your research paper " Deep learning guided optimization of human antibody against SARS-CoV-2 variants with broad neutralization" and have a question that where is the Mutation Librari…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1699
There is a little KP.2 sublineage from China that instead evolving toward a negative charged N Glycan at S:30 …
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Hello,
I am trying to run the ARTIC pipeline on the Singularity profile with the new ARTIC V4 primer scheme set (https://github.com/artic-network/primer-schemes).
I am running the Nextflow pipeli…