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### What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
### Please describe your wishes
Meta issue tracking scanpy funct…
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I have already installed it, but it always shows"ModuleNotFoundError: No module named 'scanpy_scripts'," how can I solve it?
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Hi, this is really a practical tool! I was wondering if python users(scanpy users) could benefit from this, particularlly when Seurat can not handle million-scale cells caused by a known issue, i.e., …
SNOL2 updated
2 months ago
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@nh3 - seems to be a bit of an issue with the FilterCells tool for Scanpy. You can't use 'n_counts' or 'n_genes'- seems to need to be cell:n_counts or cell:n_genes. Otherwise you get:
```
ERROR:ro…
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hi,
A bug occurred when I was using scanpy for high variant gene arithmetic. I learned that the bug originated from scikit-misc, so I came to you for help.
>my code:
`adata.layers["counts"] = a…
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Hello,
I used the following commond generating the genes/TEs expression matrix and imported into scanpy to cluster, visualization.
But, the gene expression generated from scTE were largely not con…
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Hi,
In the scanpy, has anyone tried implementing jackstraw using anndata? If anyone has written a code to find the significant PCs in scanpy, please do share or any guide to perform it would be gre…
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Hi there,
instead of a fixed mito-percent cutoff that I have to set each time, does scanpy have some automated way of finding outliers of some heuristic to find a reasonable cutoff?
If not, do …
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Are there plans to include independent component analysis (ICA) in Scanpy? This would be useful for me. I know that it is already implemented in Seurat. Thank you
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Hi Ye,
[hamy12398](https://github.com/hamy12398), my student, and I are trying to make scVI-3D working. We are encountering the same issue on different computers.
First, installation has torch v…