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ebi-gene-expression-group
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container-galaxy-sc-tertiary
Galaxy container for single cell RNA-Seq tertiary analysis tools
MIT License
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Decoupler pseudobulk: filter genes per min number cells per contrasts
#331
pcm32
closed
2 days ago
0
Reinstate handle of failed genesets decoupler_aucell_score.py
#330
pcm32
closed
2 weeks ago
1
Adds PySCENIC AUCell Binarize
#329
pcm32
closed
2 weeks ago
0
Adds PySCENIC wrappers
#328
pcm32
closed
1 month ago
2
Decoupler pathway inference: consider gene symbol field in AnnData
#327
pcm32
opened
2 months ago
0
Pseudobulk: Suggestions of genes to ignore per contrast field
#326
pcm32
closed
2 months ago
0
Decoupler: Add default values for `min_total_counts` and `min_counts`..
#325
pavanvidem
closed
2 weeks ago
3
Fix the threshold parameter
#324
pavanvidem
closed
2 months ago
12
Improve error explanation on potential inadequate combinations of samples and factor fields
#323
pcm32
closed
2 weeks ago
0
HVG always / never + CI update
#322
pcm32
closed
4 months ago
0
HVG always / never + CI update
#321
pcm32
closed
4 months ago
1
HVG always / never + CI update
#320
pcm32
closed
4 months ago
0
HVG always / never + CI update
#319
pcm32
closed
4 months ago
1
Add parameters to Scmap
#318
pcm32
closed
5 months ago
1
Multi-threaded AUCell version
#317
pcm32
closed
5 months ago
1
AUCell handle cases with less than min genes
#316
pcm32
closed
5 months ago
0
Elbow Plot
#315
mthang
opened
6 months ago
1
inspect and manipulate with scanpy - pl.rank_genes_groups - needs a way of outputting a simple marker table
#314
miRlyKayleigh
closed
7 months ago
1
Move scanpy tools to scanpy 1.9.3
#313
pcm32
closed
7 months ago
5
scanpy qc plots
#312
ajroura22
opened
7 months ago
1
Minimum AnnData version for interoperability with tools-iuc tools?
#311
swbioinf
closed
8 months ago
7
Add parameters to Scmap
#310
hexhowells
closed
2 weeks ago
14
Decoupler AUCell var improvement and optional gene sets
#309
pcm32
closed
10 months ago
0
Decoupler Pathway Inference
#308
anilthanki
closed
6 months ago
0
Decoupler AUCell
#307
pcm32
closed
11 months ago
0
Decoupler: allow multiple merges on AnnData
#306
pcm32
closed
11 months ago
0
Move to scanpy-scripts 1.1.6 bumping all +galaxy
#305
pcm32
closed
11 months ago
0
Decoupler pseudo-bulk: Use tabular instead of CSV
#304
pcm32
closed
1 year ago
0
Decoupler pseudo bulk
#303
pcm32
closed
1 year ago
1
ScPred - version inconsistency for feature selection
#302
hexhowells
opened
1 year ago
1
Garnett outdated libraries
#301
hexhowells
opened
1 year ago
4
Parameter iterator
#300
nomadscientist
opened
1 year ago
0
Garnett - command not found error
#299
hexhowells
closed
1 year ago
5
scPred requires the package LoomExperiment as a dependency
#298
hexhowells
closed
1 year ago
3
Scmap requires the package LoomExperiment as a dependency
#297
hexhowells
closed
1 year ago
6
Detects OOM for CellBrowser even if tool exits with 0 code.
#296
pcm32
closed
1 year ago
0
Scanpy Parameter Iterator issues
#295
wee-snufkin
opened
1 year ago
0
Update sceasy to 0.0.7
#294
pcm32
opened
1 year ago
0
Errors in sceasy when converting from RDS Seurat
#293
quacksawbones
opened
1 year ago
2
Update sceasy to 0.0.7 in Galaxy
#292
quacksawbones
opened
1 year ago
2
Anndata layer swap and markers
#291
pcm32
closed
1 year ago
1
Add cell metadata merging and hopefully fix deploy
#290
pcm32
closed
1 year ago
0
Adds cell metadata merging
#289
pcm32
closed
1 year ago
0
Fix scanpy versions sorting and others
#288
pcm32
closed
1 year ago
0
Fix scanpy versions sorting and others
#287
pcm32
closed
1 year ago
0
Fix scanpy versions sorting and others
#286
pcm32
closed
1 year ago
0
updated upload-artifact to v3
#285
anilthanki
closed
1 year ago
1
Score cell cycle and other gene sets with scanpy
#284
pcm32
opened
1 year ago
0
Scanpy scrubblet by default runs on all samples, best practice is to run per sample
#283
pcm32
opened
1 year ago
0
Scanpy marker genes should have an option not to output the AnnData object again
#282
pcm32
opened
1 year ago
1
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