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Due to copying a dna5 alphabet into a dna4 index the resulting indexing data structures are no longer completely correct. This will affect the mapping process (backtracking) in extremly rare cases.
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I am getting the following error while compiling [***SeqAn***][1] Framework under Windows 10 using Visual Studio 2019.
Click to open log
```
1> [CMake] CMake Error:
1> [CMake] Runnin…
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## Platform
- SeqAn version: 3.3.0
- Operating system: Darwin MacBook-Pro-2.local 23.1.0 Darwin Kernel Version 23.1.0: Mon Oct 9 21:33:00 PDT 2023; root:xnu-10002.41.9~7/RELEASE_ARM64_T6031 a…
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Not an issue, just a question.
Since the update of SeqAn that now requires GLIBC 2.14 the binaries I have created no longer run on many of the production HPC environments that run Scientific Linux 6…
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- [ ] find() interface for online algorithms supports multiple needles but only one haystack, find() interface for indices is the other way around. Either one should add trivial for-loop wrappers to o…
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### Description
The components of the seqan3 library, e.g. the index data structures, the alignment algorithms, the alphabets etc, should be split into their own small libraries, which are then inc…
rrahn updated
3 years ago
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Hello,
This is a great tool!
Can you please elaborate on the various results generated.
Explanation of the various column data will really be helpful.
An addition of column header will also do …
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### Description
`seqan3::concatenated_sequences` is a container that is supposed to be more efficient when using "static" input data (many read operations, few to no write operations)
In contrast…
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Hi, I am using the pipeline for riboseq analysis and other than a couple of slight changes (just some salmon commands), it is working fine until the riboprof section, where this error is being display…
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Hi,
I am observing a performance issue with the strong-scalability of `async_input_buffer`
Here are the code snippet and observations of the test case compiled with -O3 flag.
SeqAn3 Version: **3…