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This is a (basic) script to create and populate a CVMFS alien cache for use on systems that do not have access to the internet (but you do require internet access to perform the initial run of the scr…
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To use [a Singularity container on the Farm](https://docs.sylabs.io/guides/3.0/user-guide/quick_start.html#overview-of-the-singularity-interface) simply run `module avail | grep "singularity"` followe…
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i admit this is not quite an 'issue'. I'm running on a HPC server without singularity. My server admin is not quite willing to install singularity since there is not much demand from the other users t…
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From https://gitter.im/jean-zay-users/jean-zay-doc?at=5eda173d225dc25f54c99d35 except now that nodes are RedHat8 so it is a bit simpler
### Build singularity image on the login node:
```sh
expo…
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**Please include the log file**
If the "An error has occurred"-dialog mentions a log file, then please include the log file to this report. A simple "copy-paste" of the log file contents into the re…
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version mismatch smac2.0 + hpobench python 3.9.
dask distributed has non-acceptable typings
create extra branch that also fixes the np.float problem...
also automatically load `ml system singularit…
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When I try to run the map_leafcutter_cluster_to_gene part for post-processing, it gives me this error..
```
FATAL: could not open image /restricted/projectnb/casa/xqtl-pipeline/container/singul…
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
v1.2.0-g36f41e7
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No response_
### …
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**Please include the log file**
$ singularity
Singularity 1.00 (commit: 2ebc2f3f2059b96885416167363bde2e27ece106)
Running under Python 3.9.5 (default, Jul 15 2021, 11:19:42) [GCC 10.3.0]
pygame 2.…
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To run on an HPC, I'm wondering if you have a singularity representation of the Docker container