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Hi
I had HQ tasks that were failing but could not debug their error messages because the HQ log file was reporting this:
```
hq log hq-processing.log summary
```
was giving me this
```
Invali…
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Write a slurm sbatch launcher
Could be based on:
- https://pypi.org/project/simple-slurm/ for Python script, but could be limited in certain computing centers
- bash script
- [ ] check if con…
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Hello, I recently tried to use submitit to manage my VASP jobs, but I encountered a strange issue.
Problem Description:
After executing the test.py, when I check the job status using 'squeue,' it…
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### System details
RStudio Edition: Server
RStudio Version : 2023.06.2 Build 561
OS Version : CentOS 7
R Version : n/a
### Steps to reproduce the problem
* R…
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https://github.com/A2-ai/slurmtools/blob/93f438d596d22997bd006087bf62e0e73589c789/R/submit-model.R#L66
With different runs, as a user, I would like to have ability to customize runs names
```[ta…
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**Snakemake version** 8.16.0
**Describe the bug**
The default behavior of `cores` is different and limits the number of threads for submitted jobs to the number of cores on the host machine.…
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I'm running a 1536 well workflow on the FMI deployment and will report some stress-testing take-aways.
This is a (sanitized) version of the workflow I'm running:
[1536_well_workflow.json](https:…
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- [x] Install the [latest Snakemake version](https://snakemake.readthedocs.io/en/stable/) (document which exactly)
- [x] Run the tutorial locally with it
- [x] Get to run the tutorial using SLURM ([…
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Hi,
Our hpc runs 2 slurm clusters, this requires us to provide the -M or --cluster option to most slurm related commands like sbatch, squeue and scancel. This option is unsupported in snakemake 8+ …
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Context: I've got a SLURM cluster. I want to run `code tunnel` inside of interactive jobs such that users can then use the compute node for remote development. (Note, I don't want to use SSH as variab…