-
**Snakemake version** 6.3.0
**Describe the bug**
Snakemake is called by `spacemake run` (link: https://spacemake.readthedocs.io/en/latest/index.html).
Upon attempting to run I get the er…
-
After developing the initial workflow for the `dnadiff` method #12, we need to ensure that we can reproduce the `AlignedBases` value provided by `dnadiff`.
To achieve this, we should:
- Write a mo…
-
Hello,
I am encountering an error when I try to run this command:
`snakemake --use-conda --conda-frontend mamba --conda-create-envs-only --cores 10`.
The error says:
```
Traceback (most recen…
-
**Are you using the latest release?**
I am using the singularity lastest sif of funannotate
**Describe the bug**
I want to use the snakemake+singularity workflow to predict fungal gene informatio…
-
Hi everyone,
I've been running the aMeta pipeline for over a week (I have many samples) but it got stuck in a step for days. I cancelled the run and then I run it again with --rerun-incomplete.
…
-
Some workflows from snakemake-workflows seem to trigger formatting warnings, maybe caused by inconsistent snakefmt behavior. Let's investigate that here.
-
Dear authors,
Thanks for the great tool. I'm currently running the following command on Computerome:
maginator -v \
-r \
-c \
-o \
-g "/home/databases/gtdbtk/release207_…
-
Hi,
Does someone know if it is possible to read a Snakefile in Python and load all the rules into variables?
For example, given the following Snakefile
```
WDIR="test"
rule all:
input:…
-
Hi! I am fairly new to the Scenic plus tool. I have been able to successfully install and get the snakemake workflow running. I have been working with non multiome data. My workflow runs just fine unt…
-
Hi everyone
I am not very familiar with snakemake but its part of a pipeline I am trying to execute (align.smk in https://bitbucket.org/bucklerlab/msa_pipeline/src/master/workflow/rules/) . I have…