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Looking at Visumap, the majority of those algorithms are found in scikit-learn or scikit-bio, namely
**Ordination**
- [SMACOF](https://github.com/scikit-learn/scikit-learn/blob/master/sklearn/manifol…
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### Basic information
* My operating system and version: Windows 11
* My mzmine version: mzmine 4.0.8
### What happened
I am currently working with the GC-MS workflow in mzmine and have a do…
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**Algorithms**
* Linear Model
- [x] Ordinary Least Squared Linear Regression
- [x] Gradient Descent Linear Regression
- [x] Stochastic Gradient Descent Linear Regression
- [x] Logist…
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# 2024 年 3 月论文阅读笔记 | 『姑妄言之姑妄听之』
三周看了两篇 Biometrika，此前还没见过 spectral
clustering，写总结发现很多地方完全理解错误，真是令人感叹（
下次还是一边看一边写吧，感觉可以少花点时间，但好像又不保证能发现一开始理解错的地方（（
[https://chiyuru.github.io/2024/03/21/Work-Log-2024…
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### Describe the issue linked to the documentation
## Issue Source:
https://github.com/scikit-learn/scikit-learn/blob/59dd128d4d26fff2ff197b8c1e801647a22e0158/sklearn/cluster/_spectral.py#L452-L…
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Hi all,
The read_clustering step failed for whole operons (16S-ITS-23S, ~4.1k mean read length).
The whole nextflow pipeline ran through without errors (on a Mac M1) with test fastq files `mock4…
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Hi, is there a particular reason as to why you are setting the max(k) to be the number of clusters for SpectralClustering towards the end of the Verification Stage in the dave.py file?
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some potential options:
-- Near linear time algorithm to detect community structures in large-scale networks
-- louvain
-- Multi-Threaded Modularity Based Graph Clustering using the Multilevel Paradi…
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I have a few questions:
a) are there any plans to implement mini-batch k-means or spectral clustering?
b) ++ and furthest k-means initialization don't appear to parallelize very efficiently and can …