genomicsITER NanoCLUST issues

genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

MIT License

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issues

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NanoClust error

#96 Jolline-nga opened 1 week ago
0
Potential bug with `cluster_sel_epsilon` option. Rounded to 0

#95 aringeri opened 3 months ago
0
Change database

#94 ccuriqueo opened 3 months ago
0
amplicons of whole operon (16S-ITS-23S, ~4.1k mean read length) failed at read_clustering step

#93 chris-krohn opened 3 months ago
4
Error when using Nextflow 22.10.7: Unable to parse config file...compile failed for sources FixedSetSources...

#92 imanamoeba opened 5 months ago
0
NanoCLUST script not supported by latest Nextflow

#91 lucas-g-huggins opened 5 months ago
1
Unable to attach MultiQC report to summary email

#90 ealderli closed 7 months ago
0
Add singularity profile

#89 jennyfothergill opened 1 year ago
2
Create a database (DB) from a custom database.

#88 miangher opened 1 year ago
0
No taxonomy in the summary file

#87 camillaln opened 1 year ago
0
Remote resource not found when running via Nextflow with nf-core/nanoclust

#86 alanorth opened 1 year ago
2
touch Permission denied with test

#85 brbergamo opened 1 year ago
0
Error read_clustering (ValueError: could not convert string to float: 'TTTTG')

#84 SieglindeCoppens opened 1 year ago
0
medaka consensus error

#83 tarah28 opened 1 year ago
1
Patch 1

#82 liuweisu opened 1 year ago
0
ERROR: Nextflow DSL1 is no longer supported

#81 iaposto closed 1 year ago
1
Error executing process > 'get_abundances (1)'

#80 BirgitRijvers closed 1 year ago
4
How we get reads for each consensus fasta file in each cluster, and coverage of our data

#79 simaafshar opened 1 year ago
0
some samples terminate at read_correction due to gzip: corrected_reads.correctedReads.fasta.gz: No such file or directory

#78 MichelMoser opened 1 year ago
2
Process `consensus_classification (5)` terminated with an error exit status (255)

#77 ysuzuki1978 opened 1 year ago
1
Merge fastq files prior to Nanoclust

#76 liliay opened 2 years ago
0
Error executing process > 'consensus_classification (1)'

#75 liliay opened 2 years ago
4
Blast DB error during consensus_classification

#74 Nobelex closed 2 years ago
0
Process read_correction is applied to a subset of reads from the fasta file

#73 mszimmermann opened 2 years ago
0
Can you do OTU clustering with ASVs that are different lengths?

#72 jolespin opened 2 years ago
0
Error executing process > 'get_abundances (1)'

#71 claudiodonati opened 2 years ago
2
Error running test

#70 claudiodonati opened 2 years ago
3
Error_executing_process > 'join_results(1)'

#69 HealthyMadness opened 2 years ago
0
Error: Infinite execution of the docker analysis of the nanoclust profile, execution in conda environment.

#68 HealthyMadness opened 2 years ago
0
read_clustering error with own data, test data works

#67 thierryjanssens opened 2 years ago
0
consensus_classification error ?

#66 ap1438 closed 2 years ago
5
I Got this error while running Nanoclust?

#65 ap1438 closed 2 years ago
0
How to avoid create config env in different data (when -profile conda)

#64 cam315 opened 2 years ago
0
Missing workflow definition - DSL2 requires at least a workflow block in the main script

#63 timyaro closed 2 years ago
2
Process consensus_classification terminated with an error exit status (255)

#62 fairquestion opened 2 years ago
4
medaka fails

#61 vdejager opened 2 years ago
0
Error in: NCBI C++ Exception > consensus_classification

#60 simaafshar opened 2 years ago
3
sample.fastq format issue

#59 ctmlab4 opened 2 years ago
0
Is it possible to set merylMemory within the NanoClust workflow?

#58 DanBeaton closed 2 years ago
1
`get_abundances (1)` terminated with an error exit status (1)

#57 gghyl opened 2 years ago
5
Noting toxonomy information for taxid from api.unipet using get_abundance.py

#56 simaafshar opened 2 years ago
0
Taxon_id output from http://api.unipept.ugent.be/api/v1/taxonomy.json?input have no output ,even for mock4_run3bc08_5000.fastq !, t

#55 simaafshar closed 2 years ago
0
read clustering issue

#54 mfranchett opened 2 years ago
1
Update main.nf

#53 pufetin closed 2 years ago
0
Interpret paths from blast db arguments

#52 FranciscoDA closed 2 years ago
0
swap memory issues

#51 mawa86 opened 2 years ago
2
Not a valid project name: main.nf

#50 mawa86 closed 2 years ago
0
[test,conda]: read_clustering error

#49 RemiMaglione opened 3 years ago
4
No such variable: barcode

#48 Socotr opened 3 years ago
1
Docker profiles

#47 msierk opened 3 years ago
0