genomicsITER NanoCLUST issues

genomicsITER / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

MIT License

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issues

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nanoclust running problem read_clustering

#46 Aspergillo opened 3 years ago
1
Launching 'main.nf' [nauseous_albattani] - revision: 4b892cc54e

#45 Aspergillo opened 3 years ago
0
Missing output file(s) `consensus_medaka.fasta/consensus.fasta` expected by process `medaka_pass (3)`

#44 Syutenjyo opened 3 years ago
4
Error executing process > consensus_classification

#43 fritzthm opened 3 years ago
18
Error executing process > read_correction

#42 adhamzul opened 3 years ago
1
Error executing process > 'output_documentation'

#41 Syutenjyo opened 3 years ago
0
Missing headers in consensus classification

#40 Cynthiavlu opened 3 years ago
1
Failed to create Conda environment

#39 timregan opened 3 years ago
1
Add full NCBI taxonomy to .nanoclust_out.txt file [Feature request]

#38 jmtsuji opened 3 years ago
0
Performing differential OTU using nanoclust data

#37 kcmtest opened 3 years ago
2
Fail process > fastqc (1)

#36 icotto25 opened 3 years ago
2
Error consensus classification

#35 SchNadine closed 3 years ago
2
Error executing process > 'read_clustering (1)'

#34 rasmi-ui opened 3 years ago
6
Error in read_clustering step

#33 gghyl opened 3 years ago
1
Error in the get abundances step, by taxa not giving a response from Unipept.

#32 Thomieh73 opened 3 years ago
3
Using slurm instead of local

#31 Thomieh73 closed 7 months ago
4
Add profile for singularity

#30 Thomieh73 closed 3 years ago
0
Error executing process > 'read_correction (2)'

#29 anilchauhanhp9 opened 3 years ago
0
use of other database

#28 ajinkyakhilari opened 3 years ago
7
Fail to create conda environment and fail to process QC run

#27 gghyl opened 3 years ago
10
unable to specify hdbscan option "-min_samples"

#26 Robvh-git opened 3 years ago
0
Installation of NanoCLUST

#25 gghyl closed 3 years ago
1
read clustering error

#24 ajinkyakhilari opened 3 years ago
6
Allow single cluster in HDBSCAN

#23 schorlton closed 3 years ago
0
Taxid output "Nan"

#22 Qi-Maria closed 3 years ago
1
SOLVED: how to solve "ERROR ~ No such variable: barcode" ?

#21 Robvh-git closed 3 years ago
1
run test fail

#20 vesperlight2 closed 3 years ago
3
ValueError: invalid literal for int() with base 10: 'Bradyrhizobium mercantei'

#19 devindrown closed 3 years ago
6
Default BLAST DB location

#18 devindrown closed 3 years ago
2
pipeline error

#17 ajinkyakhilari closed 3 years ago
1
Phylum level

#16 aldertzomer closed 4 years ago
1
Global OTU table

#15 erifa1 opened 4 years ago
2
Installing NanoCLUST as lmod module

#14 eyashiro closed 3 years ago
3
Expose read length settings to allow other analysis of other amplicon regions.

#13 druvus closed 4 years ago
0
Fix conda environments

#12 druvus closed 4 years ago
1
read clustering error

#11 ajinkyakhilari closed 4 years ago
2
abundance plot error

#10 ajinkyakhilari closed 4 years ago
2
How about metagenomics data using NanoCLUST workflow

#9 ray1919 closed 4 years ago
1
kmer_freq error

#8 YulinzhangSia closed 4 years ago
2
Error running test at read_clustering

#7 Electrocyte closed 4 years ago
2
#Cannot read project manifest

#6 YulinzhangSia closed 4 years ago
1
Link to nf-core slack

#5 ewels closed 4 years ago
2
REFERENCE: Running the pipeline with 50 samples.

#4 genomicsITER closed 4 years ago
11
BLAST Database error: No alias or index file found for nucleotide database

#3 fahadkhokhar closed 4 years ago
9
trouble installing

#2 cheberling closed 4 years ago
31
Error at read-correction step

#1 fahadkhokhar closed 4 years ago
19