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Hello,
I've noticed that MSFragger underperforms significantly when searching against the mouse FASTA. My instrument was calibrated and QC'd so it shouldn't be the problem. Median mass accuracy fro…
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**Question**
Dear oktoberfest maintainers,
I tried the `SpectralLibraryGeneration` workflow starting from a complete reference proteome (`"library_input_type": "fasta"`) and the job finished suc…
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**Describe the bug**
When I ran the spectral library generation job through json input file i got this error FileNotFoundError: [Errno 2] No such file or directory: 'C:\\dataAnalysis\\Oktoberfest_t…
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**Describe the bug**
```
python3 run_oktoberfest.py --config_path ~/CEcalibration_config.json
2023-09-22 13:04:50,976 - INFO - oktoberfest::main Oktoberfest version 0.4.0
Copyright (c) 2020-2021…
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I am trying to create evidence and msms.txt files for maxquant search
from a fasta file but…
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Hi,
Thank you for your great effort to develop this package! As I do not use Spectronaut or Skyline to analysis my data (instead of MaxQuant and DIA-NN), I wonder whether output files from MaxQuant…
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Hi,
I think it is more appropriate to open a new thread on this.
I wonder if there is a way to keep protein group separate between ambiguous peptides. For example,
peptide A, GRIA1; GRIA2
pep…
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**Describe the bug**
in silico digestion does not follow specified rule
**To Reproduce**
```
{
"type": "SpectralLibraryGeneration",
"tag": "",
"allFeatures": false,
"inpu…
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Hi, great work and thanks for sharing!
While playing around, I could not access your preferred export schema for Spectronaut's report files.
It doesn't seem to exist (404), neither for precursor …
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Hi! Congrats for your amazing work and the easy to use package.
I'm using a short experiment with 6 cell culture DIAPASEF. During the experiment I've used both Spectronaut and DIANN.
I've downloade…