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I am gradually learning about RNA seq related knowledge, and I have some experience with DNA-seq before.
Take delly as an example, when detecting Structural variation, there is the concept of VAF.
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When running the code in the following blog
https://github.com/tensorflow/probability/blob/main/tensorflow_probability/examples/jupyter_notebooks/Structural_Time_Series_Modeling_Case_Studies_Atmosp…
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Hello.
I'm having trouble installing using snakemake...
Output log is shown below:
```
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 1 (use --cores to define parallelism)…
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Sebastien Markbage suggested the addition of four kinds of value types:
- Record
- Tuple
- Map
- Set
These are all things that conceptually could be built on what was written up till now but it would…
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I am scaffolding several ONT+illumina assemblies (flye) against a T2T reference genome of a sister species. Each of my assemblies represents a specific strain of my species of interest--so while I exp…
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Hello!
I am building pangenome graphs for inversion regions in Atlantic herring. In the first case below (image 1a and 1b), I constructed 1b graph by reverse orienting all the sequences but keeping…
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## What problem does this address?
After using (custom) block variations in a larger scale project, block styles seem to miss fine-grained control over _when_ they appear in relation to variations.
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Hi all,
I am building a structural time series for causal analysis.
I would like to enforce the weights in DynamicLinearRegression (estimated by variational inference) to be non-negative due to i…
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Hi,
I have been working with couple of accessions which I know they have a big inversion. When I run among those samples, I would expect to see this inversion for all of these accessions. But I cou…
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Hi! I'm using this pipeline (https://github.com/nanoporetech/pipeline-structural-variation) which uses LRA, however it accidentally abrupts during lra index. So, I tried to use LRA index independently…