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Hi
I am working on my single-cell RNA seq dataset that is pre-processed by using Seurat pipeline to analyze intercellular interactions. When I run my data by cell_signaling function, I realized that…
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Organize thoughts and outlines with Lesli about data needed for the clustering algorithm. Make sure that the outlines are clear so that we can move forward to Q5 seamlessly. Provide an outline of the …
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We need to be able to map PRO terms used by CL to something the rest of the world can use. I think that means uniprot. Xrefs to uniprot are rare:
https://api.triplydb.com/s/tuAThwx4i
We mostly…
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Hi ,
Thanks a lot for this useful tool !
I'm running Liana and i'm curious that you cannot provide methods to generate Chord diagram or heatmap as in the liana R wrapper.
Have you planned to…
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Hi Matt,
A girl in my lab is trying to set up ITEP with some bacterial genomes. She ran into an issue: convertGenbank2table.py fails because some of here genbank files (downloaded from RAST) have join…
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From 2 tickets
https://github.com/geneontology/go-ontology/issues/18370
https://github.com/geneontology/go-ontology/issues/18458
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Hello, I encoutered a warning today with this code
interactions = c2c.analysis.SingleCellInteractions(rnaseq_data=rnaseq.to_df().T,
ppi_data=lr_pai…
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Hi there,
Congrats on a great work, and thanks for developing this package.
I am attempting to pull TCR-seq data for T cells that also have the GEX/CITE-seq Seurat objects.
**QUESTION 1.** …
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Question to authors who wrote parts related to cell biology in Intro, Pathogenesis, & Therapeutics,
@nilswellhausen
@rays1987
@esell17
@jinhui2
@anskelly
@davemai
& if there's anyone else I mis…
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```
Compartment volumes cannot be defined as functions that can change in time.
This makes it difficult to model scenarios such as cell growth or endocytosis.
Note that BNG does actually allow the v…