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Dear Professor,
I am currently planning to analyze transcriptome data from The Cancer Genome Atlas (TCGA) project using this R package for my analysis. Given the various data transformation options…
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Hi, could you please share with me the distribution of slides used for training and testing in the TCGA dataset, along with their respective labels?
I noticed that it's mentioned here "We randomly…
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https://shixiangwang.github.io/home/en/post/ucscxenatools-201908/
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Dear EcoTyper team,
Hi, all! Hope you been well and thanks so much for sharing amazing tool.
I was following tutorials using new TCGA data with in-house scRNA-seq dataset.
Initially, I run Tuto…
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Hello, the tcga_brca_subset.csv.zip file you provided regarding the grouping information of TCGA BRCA is corrupted. Could you please resend it to me? I am looking forward to your reply.
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Hi, I really enjoy your package.
I downloaded TCGA RNAseq fpkm value and try to produce the IPS as follows
`FPKMtoTPM
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The following link show a protein length of 699 for gene BRCA1 but PTM track has dots over 699
https://www.cbioportal.org/results/mutations?cancer_study_list=ov_tcga_pub&cancer_study_id=ov_tcga_pub&ge…
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Could you please provide more details on generating TCGA datasets?
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Hi RMolania! Thanks for the very useful approach. I want to use RUV-III with PRPS for non-TCGA RNA-seq data, but I don't know how to process the non-TCGA RNA-seq data to use RUV-III with PRPS. Would y…
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Some examples here: https://arax.ncats.io/beta/?r=36527
example edge attribute list containing the attribute of interest:
```
--
attribute_type_id: | biolink:aggregator_knowledge_source
value_t…