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digitalcytometry
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ecotyper
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
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Help with error Ecotyper failed: Error in RunJobQueue()
#97
WJRDW
opened
2 days ago
0
Can EcoTyper be used in murine tumor analysis?
#96
Lewisen-Liu
opened
3 days ago
0
Can it use in Non-tumor anlysis?
#95
fengqlin
closed
1 month ago
1
Running bulk recovery with published cell states
#94
WJRDW
closed
1 month ago
1
EcoTyper failed - EcoTyper_recovery_bulk.R
#93
AimSchina
closed
1 month ago
1
Ecotyper website server
#92
bplet01
closed
1 month ago
4
Question regarding data displayed as heatmap on "https://ecotyper.stanford.edu/carcinoma/"
#91
itigupta2429
opened
3 months ago
0
Discovery/recovery function & functional states like CancerSEA
#90
LiuCanidk
closed
1 month ago
1
Spot-Level Immune Cell Deconvolution in Spatial RNA-seq Data
#89
sallyseullee-0821
opened
3 months ago
0
[Ecotyper] Error in NMF step at Tutorial1 using user-defined profile
#88
jpark27
opened
4 months ago
1
How can I solve this issue?
#87
LynnChan99
closed
1 month ago
7
errors with EcoTyper_recovery_bulk.R
#86
tjogzt
closed
1 month ago
2
Question about recovery scRNA in ecotyper
#85
LynnChan99
closed
6 months ago
0
Tutorial 4 Discovery: I don't set Singularity but it seems tends to run on the Singularity, NOT the default Docker
#84
Sawakotx
opened
8 months ago
1
EcoTyper_recovery_bulk.R
#83
chrismahony
closed
1 month ago
3
ecotyper for GeoMx
#82
chrispatsalis
closed
2 months ago
1
about Token of CIBERSORTx
#81
BolinLiuu
closed
2 months ago
1
Failure of Recovery of Ecotypes (Tutorial 3) in Spatial Transcriptomics data
#80
corecontingency
opened
9 months ago
2
Question with TCGA cell state assignment from ecotyper website
#79
WuRAFY
closed
2 months ago
1
Tutorial 3 error parse_args_output
#78
Torti11
closed
2 months ago
1
tutorial 3 errors unless "Recovery cell type fractions" specified
#77
istvankleijn
closed
2 months ago
2
Step4 Errors in EcoTyper_discovery_scRNA.R
#76
WangKang-Leo
closed
10 months ago
0
Can't align to any ecotype
#75
WangKang-Leo
closed
8 months ago
1
Error in consensus + nrun(x) * consensus(x) : non-conformable arrays
#74
WangKang-Leo
closed
10 months ago
2
Will the marker gene vary with different discovery datasets?
#73
LynnChan99
closed
10 months ago
6
Error: failed to create symbolic link 'datasets/bulk/bulk_lung_data/data.txt': Operation not permitted
#72
wanglu2014
closed
10 months ago
1
cp: Cannot stat
#71
dmiyagi
closed
10 months ago
2
Change the Size of Output Images?
#70
dmiyagi
closed
2 months ago
1
Metadata problem
#69
dmiyagi
closed
1 year ago
1
step4 error
#68
sayhello854123
closed
10 months ago
6
Using an existing cancer single-cell atlas dataset as discovery?
#67
WangKang-Leo
closed
1 year ago
1
How to get the cibersortx token?
#66
dufeng311
closed
1 year ago
1
question in recovery of cell states in scRNA dataset
#65
dufeng311
closed
1 year ago
2
Problems downloading the results
#64
fernangomezv
closed
1 year ago
2
Issue with cell type specific genes when performing scRNAseq discovery
#63
dkwon6
closed
1 year ago
1
Estimating cell-type fractions from bulk RNA
#62
danieljrichard
closed
1 year ago
1
Dependency unmentioned in README
#61
SyouTono242
closed
1 year ago
1
Ecotype run error
#60
Panyitong
closed
1 year ago
1
genes used in input file
#59
mao223
closed
1 year ago
1
Error in tutorial 1
#58
mao223
closed
1 year ago
1
Question: Discovery of ecotypes in bulk vs single-cell RNA
#57
ccruizm
closed
1 year ago
1
Wilcoxon-error when having only a single cell
#56
NoahHenrikKleinschmidt
closed
1 year ago
1
Turoial3: Visium tutorial
#55
chrismahony
closed
1 year ago
1
Incongruence in Ecotype_Heatmap.pdf, Ecotype_Assignment.txt, and Ecotype_Abundance.txt sample number
#54
auroramaurizio
closed
1 year ago
1
Expression matrix of scRNA-seq
#53
HengqiLiu
closed
1 year ago
1
Minimum coverage of bulk RNASeq samples for Lymphoma EcoTyper
#52
auroramaurizio
closed
1 year ago
1
question regarding abundance table
#51
kaizen89
closed
1 year ago
3
scRNA-Seq Lymphoma Recovery
#50
LeonHafner
closed
1 year ago
1
CIBERSORTx integration fails
#49
NoahHenrikKleinschmidt
closed
1 year ago
7
Is the concept of ecotype suitable for chronic diseases?
#48
PiaoyangGuohai1
closed
1 year ago
1
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