Thank you for the amazing tool!
I've been trying to perform de novo discovery of cell states and ecotypes in scRNA-seq data (tutorial 5), but keep encountering the same error and can not figure out its origin. Th error message doesn't really help trying to find the root of the issue.
At first I thought the size of my input matrix (16GB) might be the problem, but I'm running the analysis remotely on a HPC cluster so don't think the issue lies there. Would it be a possibility to provide you with my input matrix, annotation and configuration file to see if you are running into the same problem and the error is reproducible?
Thank you very much!
Dear EcoTyper team,
Thank you for the amazing tool! I've been trying to perform de novo discovery of cell states and ecotypes in scRNA-seq data (tutorial 5), but keep encountering the same error and can not figure out its origin. Th error message doesn't really help trying to find the root of the issue.
At first I thought the size of my input matrix (16GB) might be the problem, but I'm running the analysis remotely on a HPC cluster so don't think the issue lies there. Would it be a possibility to provide you with my input matrix, annotation and configuration file to see if you are running into the same problem and the error is reproducible?
Thank you very much!
Best, Wout