search

digitalcytometry / ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
Other
184 stars 42 forks source link

Minimum coverage of bulk RNASeq samples for Lymphoma EcoTyper #52

Closed auroramaurizio closed 2 years ago

auroramaurizio commented 2 years ago

Hello, and thank you for developing such a nice and useful tool! I was wondering, is there a minimum coverage-number of reads/sample you suggest to achieve in order to consider the sample a "good" candidate for the analysis? Thank you, best, Aurora

cbsteen commented 2 years ago

Hello, thank you for the kind words :) No, no other requirements then standard QC checks you would do for any RNA-seq experiment.